5203_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 55643 lines in total Total number of methylation call strings processed: 111286 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1813834 Total methylated C's in CpG context: 29295 Total methylated C's in CHG context: 3166 Total methylated C's in CHH context: 14301 Total C to T conversions in CpG context: 186579 Total C to T conversions in CHG context: 290961 Total C to T conversions in CHH context: 1289532 C methylated in CpG context: 13.6% C methylated in CHG context: 1.1% C methylated in CHH context: 1.1%