Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
58371 |
| Pairs without alignments under any condition |
31612 |
| Pairs that did not map uniquely |
10017 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2443828 |
| Methylated C's in CpG context |
39076 |
| Methylated C's in CHG context |
3876 |
| Methylated C's in CHH context |
17506 |
| Methylated C's in Unknown context |
272 |
| Unmethylated C's in CpG context |
251416 |
| Unmethylated C's in CHG context |
392308 |
| Unmethylated C's in CHH context |
1739646 |
| Unmethylated C's in Unknown context |
7294 |
| Percentage methylation (CpG context) |
13.5% |
| Percentage methylation (CHG context) |
1.0% |
| Percentage methylation (CHH context) |
1.0% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
29260 |
original top strand |
| CTOT |
14 |
complementary to original top strand |
| CTOB |
17 |
complementary to original bottom strand |
| OB |
29080 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
58371 |
| Unique alignments |
55643 |
| Duplicates removed |
2728 |
| Duplicated alignments were found at 2653 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1813834 |
| Methylated C's in CpG context |
29295 |
| Methylated C's in CHG context |
3166 |
| Methylated C's in CHH context |
14301 |
| Unmethylated C's in CpG context |
186579 |
| Unmethylated C's in CHG context |
290961 |
| Unmethylated C's in CHH context |
1289532 |
| Percentage methylation (CpG context) |
13.6% |
| Percentage methylation (CHG context) |
1.1% |
| Percentage methylation (CHH context) |
1.1% |
|
|
M-Bias Plot
