Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
60900 |
| Pairs without alignments under any condition |
28595 |
| Pairs that did not map uniquely |
10505 |
| Genomic sequence context not extractable (edges of chromosomes) |
1 |
|
|
Cytosine Methylation
| Total C's analysed |
2645668 |
| Methylated C's in CpG context |
37073 |
| Methylated C's in CHG context |
3678 |
| Methylated C's in CHH context |
15876 |
| Methylated C's in Unknown context |
262 |
| Unmethylated C's in CpG context |
282623 |
| Unmethylated C's in CHG context |
432596 |
| Unmethylated C's in CHH context |
1873822 |
| Unmethylated C's in Unknown context |
7796 |
| Percentage methylation (CpG context) |
11.6% |
| Percentage methylation (CHG context) |
0.8% |
| Percentage methylation (CHH context) |
0.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
30633 |
original top strand |
| CTOT |
6 |
complementary to original top strand |
| CTOB |
6 |
complementary to original bottom strand |
| OB |
30254 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
60899 |
| Unique alignments |
57943 |
| Duplicates removed |
2956 |
| Duplicated alignments were found at 2857 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1975314 |
| Methylated C's in CpG context |
28144 |
| Methylated C's in CHG context |
3074 |
| Methylated C's in CHH context |
13166 |
| Unmethylated C's in CpG context |
210593 |
| Unmethylated C's in CHG context |
323279 |
| Unmethylated C's in CHH context |
1397058 |
| Percentage methylation (CpG context) |
11.8% |
| Percentage methylation (CHG context) |
0.9% |
| Percentage methylation (CHH context) |
0.9% |
|
|
M-Bias Plot
