3501_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 57780 lines in total Total number of methylation call strings processed: 115560 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1860250 Total methylated C's in CpG context: 27690 Total methylated C's in CHG context: 3151 Total methylated C's in CHH context: 13309 Total C to T conversions in CpG context: 194133 Total C to T conversions in CHG context: 298113 Total C to T conversions in CHH context: 1323854 C methylated in CpG context: 12.5% C methylated in CHG context: 1.0% C methylated in CHH context: 1.0%