zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 58412 lines in total Total number of methylation call strings processed: 116824 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1373705 Total methylated C's in CpG context: 16457 Total methylated C's in CHG context: 1093 Total methylated C's in CHH context: 4561 Total C to T conversions in CpG context: 160479 Total C to T conversions in CHG context: 238266 Total C to T conversions in CHH context: 952849 C methylated in CpG context: 9.3% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%