Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
61736 |
| Pairs without alignments under any condition |
20553 |
| Pairs that did not map uniquely |
17711 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2142951 |
| Methylated C's in CpG context |
29209 |
| Methylated C's in CHG context |
1885 |
| Methylated C's in CHH context |
7823 |
| Methylated C's in Unknown context |
69 |
| Unmethylated C's in CpG context |
250460 |
| Unmethylated C's in CHG context |
373429 |
| Unmethylated C's in CHH context |
1480145 |
| Unmethylated C's in Unknown context |
5147 |
| Percentage methylation (CpG context) |
10.4% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15421 |
original top strand |
| CTOT |
15520 |
complementary to original top strand |
| CTOB |
15692 |
complementary to original bottom strand |
| OB |
15103 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
61736 |
| Unique alignments |
57429 |
| Duplicates removed |
4307 |
| Duplicated alignments were found at 4033 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1314284 |
| Methylated C's in CpG context |
17404 |
| Methylated C's in CHG context |
1122 |
| Methylated C's in CHH context |
4762 |
| Unmethylated C's in CpG context |
152417 |
| Unmethylated C's in CHG context |
227151 |
| Unmethylated C's in CHH context |
911428 |
| Percentage methylation (CpG context) |
10.2% |
| Percentage methylation (CHG context) |
0.5% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
