zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 57478 lines in total Total number of methylation call strings processed: 114956 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1353399 Total methylated C's in CpG context: 16221 Total methylated C's in CHG context: 1001 Total methylated C's in CHH context: 4482 Total C to T conversions in CpG context: 152373 Total C to T conversions in CHG context: 225562 Total C to T conversions in CHH context: 953760 C methylated in CpG context: 9.6% C methylated in CHG context: 0.4% C methylated in CHH context: 0.5%