A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2021-06-08, 22:22 based on data in:
/gscratch/scrubbed/sr320/060821-bigC
General Statistics
Showing 46/46 rows and 6/8 columns.Sample Name | % mCpG | % mCHG | % mCHH | M C's | % Dups | % Aligned |
---|---|---|---|---|---|---|
0501_R1 | 13.4% | 1.0% | 1.0% | 1.9 | 5.2% | 59.6% |
0502_R1 | 13.1% | 1.1% | 1.0% | 1.9 | 4.8% | 59.3% |
0503_R1 | 14.2% | 1.0% | 1.1% | 1.8 | 5.0% | 59.4% |
3501_R1 | 12.5% | 1.0% | 1.0% | 1.9 | 5.1% | 60.9% |
3502_R1 | 12.6% | 1.0% | 0.9% | 1.9 | 5.4% | 61.0% |
3503_R1 | 13.3% | 1.0% | 1.0% | 1.8 | 4.2% | 57.3% |
5201_R1 | 12.3% | 0.9% | 0.9% | 1.7 | 5.0% | 60.9% |
5202_R1 | 11.8% | 0.9% | 0.9% | 2.0 | 4.8% | 60.9% |
5203_R1 | 13.6% | 1.1% | 1.1% | 1.8 | 4.7% | 58.4% |
5901_R1 | 13.3% | 1.0% | 1.0% | 1.9 | 5.5% | 59.8% |
5902_R1 | 12.2% | 0.9% | 0.9% | 2.0 | 5.2% | 60.7% |
5903_R1 | 12.2% | 1.3% | 1.3% | 2.0 | 4.0% | 59.4% |
zr3534_10_R1 | 9.8% | 0.4% | 0.5% | 1.3 | 10.4% | 61.9% |
zr3534_1_R1 | 10.0% | 0.5% | 0.5% | 1.3 | 10.9% | 61.6% |
zr3534_2_R1 | 9.8% | 0.5% | 0.5% | 1.3 | 10.0% | 61.1% |
zr3534_3_R1 | 11.6% | 0.5% | 0.5% | 1.4 | 9.6% | 60.8% |
zr3534_4_R1 | 10.8% | 0.5% | 0.5% | 1.3 | 10.5% | 61.8% |
zr3534_5_R1 | 11.1% | 0.5% | 0.5% | 1.3 | 10.3% | 61.4% |
zr3534_6_R1 | 10.2% | 0.5% | 0.5% | 1.3 | 10.5% | 60.9% |
zr3534_7_R1 | 10.0% | 0.5% | 0.5% | 1.4 | 9.5% | 61.3% |
zr3534_8_R1 | 10.1% | 0.4% | 0.5% | 1.3 | 11.5% | 61.7% |
zr3534_9_R1 | 9.8% | 0.5% | 0.5% | 1.4 | 9.9% | 61.9% |
zr3644_10_R1 | 10.3% | 0.5% | 0.5% | 1.4 | 6.5% | 61.2% |
zr3644_11_R1 | 10.0% | 0.5% | 0.5% | 1.4 | 6.7% | 61.0% |
zr3644_12_R1 | 9.6% | 0.4% | 0.5% | 1.4 | 6.3% | 61.4% |
zr3644_13_R1 | 10.1% | 0.5% | 0.5% | 1.4 | 7.2% | 61.8% |
zr3644_14_R1 | 11.5% | 0.5% | 0.5% | 1.4 | 6.5% | 62.1% |
zr3644_15_R1 | 10.9% | 0.5% | 0.5% | 1.4 | 6.5% | 61.4% |
zr3644_16_R1 | 10.2% | 0.5% | 0.5% | 1.3 | 7.0% | 61.7% |
zr3644_17_R1 | 10.1% | 0.5% | 0.5% | 1.4 | 7.1% | 61.8% |
zr3644_18_R1 | 10.2% | 0.5% | 0.5% | 1.4 | 6.2% | 62.4% |
zr3644_19_R1 | 9.9% | 0.5% | 0.5% | 1.4 | 5.9% | 61.4% |
zr3644_1_R1 | 9.3% | 0.5% | 0.5% | 1.4 | 6.6% | 62.5% |
zr3644_20_R1 | 9.8% | 0.5% | 0.5% | 1.4 | 6.8% | 61.6% |
zr3644_21_R1 | 10.2% | 0.5% | 0.5% | 1.4 | 6.8% | 61.4% |
zr3644_22_R1 | 10.0% | 0.5% | 0.5% | 1.4 | 6.5% | 61.8% |
zr3644_23_R1 | 10.0% | 0.5% | 0.5% | 1.4 | 6.7% | 61.3% |
zr3644_24_R1 | 9.9% | 0.5% | 0.5% | 1.4 | 6.7% | 62.3% |
zr3644_2_R1 | 10.0% | 0.5% | 0.5% | 1.4 | 6.8% | 61.0% |
zr3644_3_R1 | 10.0% | 0.5% | 0.5% | 1.4 | 6.0% | 61.2% |
zr3644_4_R1 | 10.1% | 0.5% | 0.5% | 1.4 | 6.8% | 61.3% |
zr3644_5_R1 | 9.9% | 0.5% | 0.5% | 1.4 | 6.3% | 61.4% |
zr3644_6_R1 | 10.1% | 0.5% | 0.5% | 1.4 | 6.3% | 61.9% |
zr3644_7_R1 | 10.3% | 0.5% | 0.5% | 1.4 | 5.8% | 60.6% |
zr3644_8_R1 | 10.2% | 0.5% | 0.5% | 1.4 | 6.1% | 61.1% |
zr3644_9_R1 | 10.6% | 0.5% | 0.5% | 1.3 | 7.2% | 61.1% |
Bismark
Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.
Alignment Rates
Deduplication
Strand Alignment
Cytosine Methylation
M-Bias
This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.