[2021-06-08 22:22:49,734] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2021-06-08 22:22:49,734] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/sr320/.multiqc_config.yaml [2021-06-08 22:22:49,735] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-06-08 22:22:49,735] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-06-08 22:22:55,020] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2021-06-08 22:22:55,020] multiqc [INFO ] This is MultiQC v1.8 [2021-06-08 22:22:55,021] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-06-08 22:22:55,021] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/sr320/060821-bigC [2021-06-08 22:22:55,022] multiqc [INFO ] Template : default [2021-06-08 22:22:55,022] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2021-06-08 22:22:55,022] multiqc [INFO ] Searching : /gscratch/scrubbed/sr320/060821-bigC [2021-06-08 22:22:55,023] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2021-06-08 22:22:55,023] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp7v7m3g02 [2021-06-08 22:22:55,554] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:55,558] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:55,558] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:55,558] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:55,558] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:55,558] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:55,559] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:55,559] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:57,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:22:57,269] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:22:57,269] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:22:57,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:57,389] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:57,389] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:57,389] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:57,389] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:57,389] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:57,389] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:57,389] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:59,103] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5203_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:22:59,107] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:22:59,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:59,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:59,131] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:59,131] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:59,131] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:59,131] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:22:59,150] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:00,406] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3501_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:23:00,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:00,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:00,469] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:00,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:00,470] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:00,470] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:00,470] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:00,470] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:00,470] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:00,470] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:02,227] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:02,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:02,229] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:02,229] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:02,229] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:02,229] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:02,229] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:02,229] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:03,952] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:03,953] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:03,953] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:03,953] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:03,953] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:03,953] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:03,973] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:05,454] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:05,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:05,455] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:05,455] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:05,455] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:05,456] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:05,479] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:06,752] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:23:06,836] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:06,837] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:06,837] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:06,838] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:06,838] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:06,838] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:06,838] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:06,838] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:08,508] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:23:08,508] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:23:08,525] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:08,526] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:08,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5202_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:23:08,564] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:08,565] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:08,565] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:08,565] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:08,565] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:08,565] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:08,585] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:09,882] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:09,883] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:09,884] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:09,884] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:09,884] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:09,884] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:09,902] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:11,089] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:11,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:11,090] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:11,090] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:11,090] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:11,090] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:11,110] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:12,415] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:12,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:12,416] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:12,416] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:12,416] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:12,416] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:12,416] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:12,416] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:14,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:14,104] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:14,266] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:14,268] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:14,268] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:14,268] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:14,269] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:14,269] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:14,269] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:14,269] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:16,024] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:16,025] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:16,025] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:16,025] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:16,025] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:16,025] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:16,044] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:17,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_8_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:23:17,317] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:17,318] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:17,318] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:17,318] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:17,318] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:17,318] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:17,318] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:17,318] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:19,006] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:23:19,006] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:23:19,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:19,029] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:19,029] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:19,029] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:19,029] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:19,029] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:19,048] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:20,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:23:20,336] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:20,337] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:20,337] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:20,337] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:20,337] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:20,337] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:20,337] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:20,337] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:22,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:22,039] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:22,039] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:22,039] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:22,039] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:22,039] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:22,057] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:23,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_3_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:23:23,290] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bismark_summary_report.txt [2021-06-08 22:23:23,291] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bismark_summary_report.txt [2021-06-08 22:23:23,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:23,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:23,319] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:23,319] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:23,319] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:23,319] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:23,339] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:24,615] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3503_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:23:24,666] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:24,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:24,667] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:24,668] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:24,668] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:24,668] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:24,686] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:26,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:26,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:26,035] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:26,035] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:26,035] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:26,035] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:26,035] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:26,035] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:27,685] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_4_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:23:27,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:27,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:27,708] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:27,708] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:27,708] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:27,708] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:27,727] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:29,033] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:29,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:29,034] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:29,034] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:29,034] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:29,034] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:29,034] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:29,034] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:30,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:30,781] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:30,781] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:30,781] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:30,781] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:30,781] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:30,805] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:32,366] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:23:32,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:32,420] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:32,420] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:32,420] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:32,420] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:32,420] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:32,439] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:33,697] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:33,699] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:33,699] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:33,699] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:33,699] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:33,699] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:33,718] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:35,050] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:35,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:35,051] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:35,051] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:35,052] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:35,052] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:35,076] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:36,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:36,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:36,718] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:36,718] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:36,718] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:36,718] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:36,718] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:36,719] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:38,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:38,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:38,510] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:38,510] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:38,510] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:38,510] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:38,510] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:38,510] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:40,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:40,269] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:40,269] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:40,269] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:40,269] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:40,270] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:40,294] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:41,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:41,986] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:41,987] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:41,987] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:41,987] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:41,987] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:41,987] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:41,987] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:45,003] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:45,004] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:45,004] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:45,004] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:45,004] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:45,004] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:45,022] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:46,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:46,239] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:46,239] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:46,239] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:46,239] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:46,239] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:46,258] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:47,489] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_7_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:23:47,518] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:47,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:47,519] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:47,519] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:47,519] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:47,519] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:47,538] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:48,789] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:48,790] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:48,790] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:48,790] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:48,790] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:48,790] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:48,790] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:48,790] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:50,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0502_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:23:50,478] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:50,479] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:50,479] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:50,479] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:50,479] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:50,479] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:50,479] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:50,479] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:52,173] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:52,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:52,174] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:52,174] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:52,174] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:52,174] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:52,174] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:52,174] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:53,936] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:53,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:53,937] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:53,937] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:53,938] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:53,938] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:53,938] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:53,938] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:55,634] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:55,635] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:55,635] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:55,635] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:55,635] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:55,635] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:55,659] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:57,264] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:57,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:57,265] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:57,265] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:57,265] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:57,265] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:57,284] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:58,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:58,594] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:58,594] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:58,594] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:58,594] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:58,595] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:58,595] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:23:58,595] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:00,266] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:00,267] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:00,267] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:00,267] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:00,267] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:00,267] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:00,287] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:01,570] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:01,571] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:01,571] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:01,571] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:01,571] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:01,571] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:01,591] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:02,895] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:02,896] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:02,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:02,972] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:02,972] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:02,972] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:02,972] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:02,972] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:02,990] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:04,272] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:04,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:04,274] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:04,274] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:04,274] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:04,274] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:04,274] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:04,274] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:05,995] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:05,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:05,996] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:05,996] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:05,996] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:05,996] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:06,015] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:07,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5201_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:24:07,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0502_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:24:07,272] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:07,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:07,274] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:07,274] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:07,274] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:07,274] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:07,292] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:08,576] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:08,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:08,577] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:08,577] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:08,577] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:08,578] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:08,578] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:08,578] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:10,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:10,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:10,247] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:10,247] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:10,247] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:10,247] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:10,267] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:11,586] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:11,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:11,587] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:11,587] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:11,587] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:11,587] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:11,606] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:12,884] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:12,885] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:12,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:24:12,935] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:12,936] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:12,936] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:12,936] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:12,936] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:12,936] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:12,936] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:12,936] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:14,565] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:24:14,586] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:14,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:14,588] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:14,588] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:14,588] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:14,588] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:14,606] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:15,800] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:15,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:15,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:15,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:15,874] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:15,874] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:15,874] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:15,874] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:15,874] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:15,874] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:17,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:24:17,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:24:17,649] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:17,650] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:17,651] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:17,651] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:17,651] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:17,651] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:17,675] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:19,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_9_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:24:19,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_9_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:24:19,305] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:19,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:19,306] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:19,306] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:19,306] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:19,306] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:19,325] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:20,610] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:20,611] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:20,611] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:20,611] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:20,611] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:20,611] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:20,629] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:21,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:21,853] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:21,853] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:21,853] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:21,853] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:21,853] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:21,872] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:23,301] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:23,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:23,302] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:23,302] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:23,302] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:23,302] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:23,302] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:23,302] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:26,317] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:24:26,317] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:24:26,322] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5901_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:24:26,322] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0503_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:24:26,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:26,392] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:26,392] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:26,392] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:26,392] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:26,393] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:26,393] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:26,393] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:28,114] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:28,115] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:28,115] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:28,115] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:28,115] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:28,115] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:28,115] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:28,115] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:29,796] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:24:29,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:29,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:29,874] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:29,874] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:29,874] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:29,874] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:29,897] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:31,500] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:31,501] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:31,501] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:31,501] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:31,501] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:31,501] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:31,501] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:31,501] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:33,124] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:33,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:33,166] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:33,167] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:33,167] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:33,167] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:33,167] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:33,167] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:33,187] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:34,437] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:24:34,497] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:34,498] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:34,498] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:34,498] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:34,498] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:34,498] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:34,498] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:34,498] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:36,140] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:24:36,140] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_5_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:24:36,212] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:36,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:36,214] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:36,214] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:36,214] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:36,214] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:36,214] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:36,214] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:37,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:37,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:37,878] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:37,878] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:37,878] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:37,878] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:37,897] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:39,136] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3502_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:24:39,204] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:39,205] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:39,205] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:39,205] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:39,205] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:39,205] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:39,206] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:39,206] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:40,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:40,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:40,870] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:40,870] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:40,870] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:40,871] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:40,890] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:42,197] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:42,198] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:42,198] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:42,198] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:42,198] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:42,198] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:42,217] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:43,487] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:43,488] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:43,488] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:43,489] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:43,489] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:43,489] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:43,489] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:43,489] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:45,095] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:24:45,161] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:45,162] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:45,162] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:45,162] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:45,162] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:45,162] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:45,162] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:45,162] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:46,886] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:46,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:46,887] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:46,887] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:46,887] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:46,887] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:46,887] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:46,887] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:48,576] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5202_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:24:48,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:48,599] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:48,599] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:48,599] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:48,599] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:48,599] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:48,619] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:49,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:24:49,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:49,946] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:49,946] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:49,946] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:49,946] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:49,946] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:49,946] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:49,946] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:51,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:51,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:51,679] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:51,679] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:51,679] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:51,679] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:51,679] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:51,679] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:53,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:24:53,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:53,355] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:53,356] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:53,356] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:53,356] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:53,356] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:53,374] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:54,585] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:24:54,585] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_10_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:24:54,585] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:24:54,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:54,751] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:54,751] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:54,751] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:54,751] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:54,751] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:54,751] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:54,751] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:57,770] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:24:57,800] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:57,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:57,801] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:57,801] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:57,801] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:57,801] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:57,801] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:57,801] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:59,451] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_10_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:24:59,562] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:59,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:59,563] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:59,563] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:59,563] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:59,563] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:59,563] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:24:59,563] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:02,788] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:02,789] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:02,789] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:02,789] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:02,789] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:02,789] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:02,790] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:02,790] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:04,502] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:04,503] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:04,503] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:04,503] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:04,503] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:04,503] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:04,521] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:05,731] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_5902_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:05,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_5902_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:05,745] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5201_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:25:05,799] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:05,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:05,801] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:05,801] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:05,801] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:05,801] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:05,801] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:05,801] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:07,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:07,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:07,536] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:07,536] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:07,536] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:07,536] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:07,536] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:07,536] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:09,144] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_6_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:25:09,165] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:09,166] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:09,166] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:09,166] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:09,166] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:09,166] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:09,184] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:10,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:10,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:10,438] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:10,438] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:10,438] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:10,438] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:10,457] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:11,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:11,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:11,759] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:11,759] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:11,759] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:11,759] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:11,759] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:11,759] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:13,409] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:25:13,472] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:13,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:13,473] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:13,473] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:13,473] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:13,473] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:13,473] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:13,473] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:15,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:15,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:15,129] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:15,130] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_0503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:15,228] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:15,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:15,229] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:15,229] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:15,229] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:15,229] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:15,229] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:15,229] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:16,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:16,952] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:16,952] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:16,952] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:16,952] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:16,952] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:16,971] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:18,280] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:18,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:18,281] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:18,281] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:18,281] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:18,281] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:18,281] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:18,281] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:19,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_5202_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:19,898] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_5202_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:19,912] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:25:19,970] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:19,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:19,971] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:19,971] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:19,971] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:19,971] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:19,971] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:19,971] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:21,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:21,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:21,673] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:21,673] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:21,673] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:21,673] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:21,693] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:22,990] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:22,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:23,019] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:23,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:23,065] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:23,066] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:23,066] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:23,066] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:23,066] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:23,066] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:23,085] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:24,352] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:24,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:24,353] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:24,353] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:24,353] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:24,353] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:24,373] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:25,734] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:25,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:25,735] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:25,735] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:25,735] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:25,736] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:25,736] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:25,736] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:27,533] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:27,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:27,534] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:27,534] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:27,534] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:27,534] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:27,558] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:29,168] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:29,169] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:29,169] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:29,169] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:29,169] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:29,169] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:29,193] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:30,800] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:30,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:30,802] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:30,802] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:30,802] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:30,802] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:30,820] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:32,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:32,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:32,102] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:32,102] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:32,102] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:32,102] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:32,102] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:32,102] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:33,789] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:33,790] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:33,790] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:33,790] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:33,790] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:33,790] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:33,790] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:33,790] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:35,435] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:35,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:35,436] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:35,436] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:35,436] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:35,437] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:35,437] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:35,437] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:37,180] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:37,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:37,181] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:37,181] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:37,181] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:37,181] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:37,199] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:38,524] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:38,525] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:38,525] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:38,525] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:38,525] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:38,525] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:38,525] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:38,525] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:40,243] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:40,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:40,244] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:40,244] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:40,244] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:40,244] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:40,244] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:40,244] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:41,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:41,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:42,021] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:42,022] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:42,022] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:42,022] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:42,022] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:42,022] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:42,041] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:43,280] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:25:43,282] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: bismark_summary_report.html [2021-06-08 22:25:43,293] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:43,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:43,326] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:43,327] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:43,327] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:43,328] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:43,328] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:43,328] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:43,346] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:44,641] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:44,642] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:44,642] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:44,642] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:44,642] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:44,642] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:44,642] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:44,642] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:46,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0503_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:25:46,358] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:46,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:46,359] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:46,359] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:46,359] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:46,359] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:46,359] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:46,359] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:48,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:25:48,056] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3501_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:25:48,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:48,141] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:48,141] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:48,141] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:48,141] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:48,141] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:48,142] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:48,142] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:49,839] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0501_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:25:49,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:49,959] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:49,959] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:49,959] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:49,959] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:49,959] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:49,959] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:49,959] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:53,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:53,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:53,036] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:53,036] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:53,036] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:53,036] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:53,036] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:53,036] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:54,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:54,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:54,734] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:54,734] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:54,734] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:54,734] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:54,753] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:55,976] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:25:56,023] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:56,024] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:56,024] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:56,024] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:56,024] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:56,024] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:56,044] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:57,329] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:57,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:57,330] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:57,330] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:57,330] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:57,330] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:57,349] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:58,611] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:58,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:58,612] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:58,612] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:58,612] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:58,612] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:58,631] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:59,947] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:59,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:59,949] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:59,949] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:59,949] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:59,949] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:25:59,967] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:01,173] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0501_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:26:01,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:01,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:01,241] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:01,241] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:01,241] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:01,241] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:01,241] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:01,241] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:02,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:26:03,031] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:03,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:03,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:03,032] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:03,032] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:03,032] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:03,032] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:03,032] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:04,741] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:26:04,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:04,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:04,810] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:04,810] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:04,810] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:04,810] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:04,810] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:04,810] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:06,456] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:06,457] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:06,457] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:06,457] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:06,457] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:06,457] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:06,477] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:07,791] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:07,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:07,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:07,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:07,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:07,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:07,811] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:09,046] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:09,047] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:09,047] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:09,047] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:09,047] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:09,047] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:09,066] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:10,350] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:10,351] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:10,351] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:10,351] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:10,351] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:10,351] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:10,351] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:10,351] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:12,011] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:26:12,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:12,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:12,035] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:12,035] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:12,035] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:12,035] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:12,055] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:13,362] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:13,363] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:13,363] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:13,363] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:13,363] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:13,363] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:13,381] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:14,622] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:14,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:14,623] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:14,623] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:14,623] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:14,623] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:14,643] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:15,892] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:26:16,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:16,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:16,015] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:16,016] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:16,016] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:16,016] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:16,016] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:16,016] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:19,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:19,116] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:19,116] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:19,116] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:19,116] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:19,116] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:19,135] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:20,402] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5903_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:26:20,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-1966880.out [2021-06-08 22:26:20,421] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-1966880.out [2021-06-08 22:26:20,431] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0502_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:26:20,453] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:20,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:20,454] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:20,454] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:20,454] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:20,454] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:20,473] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:21,776] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_5903_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:21,777] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_5903_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:21,797] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:26:21,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:21,828] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:21,828] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:21,828] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:21,828] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:21,828] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:21,828] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:21,828] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:23,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:23,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:23,580] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:23,580] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:23,580] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:23,580] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:23,580] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:23,580] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:25,205] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:25,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:25,206] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:25,206] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:25,206] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:25,206] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:25,225] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:26,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-1966885.out [2021-06-08 22:26:26,495] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-1966885.out [2021-06-08 22:26:26,495] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: slurm-1966885.out [2021-06-08 22:26:26,495] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: slurm-1966885.out [2021-06-08 22:26:26,495] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: slurm-1966885.out [2021-06-08 22:26:26,495] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: slurm-1966885.out [2021-06-08 22:26:26,516] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: slurm-1966885.out [2021-06-08 22:26:27,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:27,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:27,886] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:27,886] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:27,886] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:27,887] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:27,905] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:29,107] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:29,108] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:29,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:29,204] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:29,204] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:29,204] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:29,204] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:29,204] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:29,204] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:29,204] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:30,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:30,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:30,962] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:30,962] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:30,962] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:30,962] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:30,962] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:30,962] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:32,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:32,720] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:32,720] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:32,720] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:32,720] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:32,720] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:32,720] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:32,720] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:34,429] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:26:34,455] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:34,456] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:34,456] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:34,456] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:34,456] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:34,456] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:34,474] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:35,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5902_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:26:35,730] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:35,731] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:35,731] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:35,731] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:35,731] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:35,732] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:35,755] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:37,390] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:37,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:37,391] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:37,392] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:37,392] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:37,392] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:37,392] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:37,392] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:40,493] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:40,494] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:40,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:40,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:40,603] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:40,603] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:40,603] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:40,603] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:40,603] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:40,603] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:42,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:42,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:42,355] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:42,355] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:42,355] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:42,355] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:42,355] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:42,355] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:44,019] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:44,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:44,020] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:44,020] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:44,020] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:44,020] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:44,038] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:45,265] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:45,266] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:45,266] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:45,266] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:45,266] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:45,266] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:45,266] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:45,266] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:47,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:47,002] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:47,002] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:47,002] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:47,002] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:47,002] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:47,020] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:48,251] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:48,252] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:48,252] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:48,252] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:48,252] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:48,252] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:48,271] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:49,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:49,599] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:49,599] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:49,599] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:49,599] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:49,599] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:49,599] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:49,599] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:51,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:51,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:51,277] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:51,277] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:51,277] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:51,277] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:51,296] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:52,564] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:52,565] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:52,565] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:52,565] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:52,565] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:52,565] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:52,584] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:53,828] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:26:53,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:53,853] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:53,853] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:53,853] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:53,853] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:53,853] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:53,873] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:55,256] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:55,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:55,257] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:55,257] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:55,257] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:55,257] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:55,257] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:55,257] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:56,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:26:57,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:57,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:57,014] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:57,014] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:57,014] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:57,014] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:57,032] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:58,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:58,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:58,271] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:58,271] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:58,271] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:58,271] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:58,272] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:58,272] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:26:59,955] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5902_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:26:59,955] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:27:00,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:00,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:00,031] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:00,031] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:00,031] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:00,031] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:00,031] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:00,031] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:01,753] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:01,754] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:01,754] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:01,754] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:01,754] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:01,754] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:01,773] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:02,986] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:02,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:02,987] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:02,987] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:02,987] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:02,987] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:03,006] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:04,304] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:04,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:04,306] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:04,306] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:04,306] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:04,306] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:04,306] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:04,306] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:06,040] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:06,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:06,041] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:06,041] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:06,041] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:06,042] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:06,042] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:06,042] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:07,773] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:27:07,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:07,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:07,798] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:07,798] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:07,798] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:07,798] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:07,818] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:09,124] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5903_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:27:09,153] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:09,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:09,154] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:09,154] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:09,154] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:09,154] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:09,173] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:10,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:10,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:10,512] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:10,512] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:10,512] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:10,512] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:10,530] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:11,685] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:27:11,685] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_2_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:27:11,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:11,828] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:11,828] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:11,828] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:11,828] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:11,828] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:11,828] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:11,828] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:14,991] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:14,992] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:14,992] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:14,992] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:14,992] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:14,993] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:14,993] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:14,993] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:16,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:16,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:16,707] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:16,707] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:16,707] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:16,707] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:16,731] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:18,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3503_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:27:18,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5203_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:27:18,285] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:18,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:18,286] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:18,286] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:18,286] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:18,286] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:18,305] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:19,548] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5901_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:27:19,604] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:19,605] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:19,605] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:19,605] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:19,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:19,606] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:19,606] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:19,606] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:21,269] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:21,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:21,270] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:21,270] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:21,270] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:21,270] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:21,290] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:22,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:22,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:22,637] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:22,638] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:22,638] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:22,638] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:22,638] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:22,638] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:24,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:27:24,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:27:24,284] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_5902_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:24,285] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_5902_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:24,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:24,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:24,366] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:24,366] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:24,366] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:24,366] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:24,366] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:24,366] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:25,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:25,975] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:25,975] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:25,975] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:25,975] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:25,975] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:25,994] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:27,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:27,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:27,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:27,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:27,277] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:27,277] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:27,277] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:27,277] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:27,295] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:28,526] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:28,527] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:28,527] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:28,527] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:28,527] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:28,527] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:28,527] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:28,527] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:30,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:30,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:30,227] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:30,227] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:30,227] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:30,227] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:30,227] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:30,228] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:31,992] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:31,993] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:31,993] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:31,993] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:31,993] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:31,993] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:31,993] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:31,993] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:33,725] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:27:33,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_5203_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:33,732] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_6_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:27:33,791] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:33,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:33,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:33,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:33,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:33,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:33,811] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:35,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:35,048] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:35,048] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:35,048] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:35,048] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:35,048] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:35,066] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:36,231] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:36,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:36,232] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:36,232] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:36,232] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:36,232] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:36,251] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:37,582] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:37,583] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:37,583] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:37,583] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:37,583] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:37,583] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:37,602] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:38,910] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:38,911] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:38,911] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:38,911] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:38,911] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:38,911] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:38,911] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:38,911] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:40,521] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:40,522] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:40,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:40,559] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:40,559] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:40,559] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:40,559] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:40,559] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:40,578] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:41,845] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:41,846] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:41,846] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:41,846] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:41,846] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:41,846] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:41,864] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:43,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:43,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:43,067] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:43,067] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:43,067] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:43,068] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:43,087] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:44,353] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:27:44,353] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3502_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:27:44,472] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:44,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:44,473] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:44,473] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:44,473] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:44,473] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:44,473] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:44,473] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_3502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:47,686] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:47,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:47,687] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:47,687] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:47,687] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:47,687] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:47,687] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:47,687] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:49,333] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:49,334] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:49,334] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:49,334] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:49,334] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:49,335] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:49,335] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:49,335] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:51,168] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:51,169] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:51,169] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:51,169] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:51,169] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:51,169] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:51,193] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:52,754] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_2_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:27:52,754] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:27:52,782] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:52,783] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:52,784] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:52,784] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:52,784] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:52,784] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:52,802] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:54,049] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:54,050] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:54,050] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:54,051] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:54,051] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:54,051] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:54,070] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:55,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0503_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:27:55,315] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:27:55,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:27:55,317] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5902_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:27:55,342] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:55,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:55,343] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:55,343] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:55,343] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:55,343] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:55,361] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:56,640] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:56,641] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:56,642] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:56,642] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:56,642] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:56,642] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:56,642] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:56,642] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:58,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:58,321] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:58,321] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:58,321] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:58,321] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:58,321] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:58,321] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:58,321] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:59,987] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:59,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:59,988] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:59,988] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:59,988] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:27:59,988] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:00,007] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:01,286] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:01,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:01,287] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:01,287] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:01,287] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:01,287] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:01,287] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:01,287] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:02,994] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_8_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:28:02,996] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:28:03,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:03,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:03,074] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:03,074] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:03,074] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:03,074] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:03,093] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:04,344] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:28:04,380] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:04,381] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_0501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:04,402] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:28:04,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:04,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:04,464] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:04,464] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:04,464] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:04,464] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:04,464] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:04,464] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:06,141] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:28:06,199] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:06,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:06,200] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:06,200] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:06,200] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:06,200] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:06,200] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:06,200] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:07,908] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:28:07,911] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3502_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:28:07,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:07,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:07,966] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:07,966] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:07,966] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:07,966] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:07,985] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:09,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:28:09,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:28:09,234] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:09,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:09,235] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:09,235] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:09,235] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:09,235] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:09,254] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:10,604] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:10,605] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:10,605] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:10,605] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:10,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:10,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:10,605] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:10,605] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:13,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:13,689] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:13,689] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:13,690] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:13,690] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:13,690] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:13,709] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:14,963] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:28:15,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:15,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:15,035] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:15,035] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:15,035] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:15,035] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:15,054] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:16,352] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:16,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:16,353] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:16,353] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:16,353] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:16,353] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:16,353] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:16,353] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:17,970] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3501_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:28:18,058] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:18,059] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:18,059] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:18,059] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:18,059] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:18,059] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:18,059] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:18,059] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:19,857] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:19,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:19,859] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:19,859] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:19,859] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:19,859] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:19,859] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:19,859] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:21,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:21,537] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:21,537] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:21,538] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:21,538] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:21,538] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:21,555] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:22,849] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:22,850] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:22,850] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:22,850] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:22,850] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:22,850] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:22,850] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:22,850] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_0502_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:26,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:26,012] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:26,012] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:26,012] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:26,012] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:26,012] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:26,012] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:26,012] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:27,750] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:28:27,776] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:27,777] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:27,777] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:27,777] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:27,777] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:27,777] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:27,796] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:29,040] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:29,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:29,041] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:29,041] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:29,041] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:29,041] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:29,060] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:30,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:30,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:30,366] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:30,366] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:30,366] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:30,366] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:30,386] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:31,654] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:31,655] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:31,655] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:31,655] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:31,655] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:31,655] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:31,674] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:33,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:33,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:33,035] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:33,035] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:33,035] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:33,035] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:33,036] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:33,036] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_3501_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:36,109] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:36,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:36,110] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:36,110] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:36,110] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:36,110] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:36,130] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_23_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:37,453] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:37,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:37,454] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:37,454] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:37,454] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:37,454] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:37,472] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:38,725] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:38,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:38,726] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:38,726] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:38,726] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:38,726] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:38,726] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:38,726] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:40,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:28:40,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:28:40,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:28:40,393] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOT_5903_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:40,394] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOT_5903_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:40,403] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:28:40,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:40,475] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:40,475] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:40,475] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:40,475] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:40,476] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:40,495] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:41,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:41,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:41,827] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:41,827] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:41,827] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:41,827] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:41,827] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:41,827] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:43,589] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:43,590] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:43,590] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:43,590] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:43,590] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:43,590] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:43,591] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:43,591] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:45,248] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:45,249] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:45,249] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:45,249] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:45,249] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:45,249] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:45,249] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:45,249] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:47,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:47,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:47,015] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:47,015] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:47,015] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:47,015] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:47,015] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:47,015] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:48,740] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:48,741] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:48,741] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:48,741] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:48,741] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:48,741] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:48,760] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:49,971] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:28:49,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:49,994] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:49,994] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:49,994] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:49,994] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:49,994] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:50,013] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:51,282] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:51,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:51,283] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:51,283] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:51,283] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:51,283] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:51,302] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:52,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:52,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:52,617] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:52,617] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:52,617] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:52,617] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:52,634] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:53,780] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:28:53,850] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:53,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:53,851] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:53,851] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:53,851] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:53,851] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:53,851] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:53,851] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:55,494] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:28:55,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5903_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:28:55,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5901_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:28:55,519] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:55,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:55,520] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:55,520] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:55,520] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:55,520] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:55,538] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:56,711] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:56,712] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:56,712] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:56,712] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:56,712] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:56,712] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:56,731] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:57,963] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:28:57,983] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:57,985] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:57,985] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:57,985] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:57,985] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:57,985] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:58,002] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:59,244] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:59,245] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:59,245] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:59,245] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:59,245] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:59,245] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:28:59,264] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:00,481] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:29:00,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:00,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:00,539] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:00,539] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:00,539] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:00,539] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:00,539] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:00,539] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:02,239] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:02,240] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:02,240] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:02,240] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:02,240] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:02,240] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:02,264] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:03,823] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:29:03,823] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3503_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:29:03,825] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 0501_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:29:03,828] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: job.sh [2021-06-08 22:29:03,856] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:03,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:03,857] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:03,857] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:03,857] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:03,857] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:03,876] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:05,106] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:05,107] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:05,107] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:05,107] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:05,107] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:05,107] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:05,126] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:06,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:06,419] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:06,419] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:06,419] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:06,420] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:06,420] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:06,420] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:06,420] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:08,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:08,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:08,103] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:08,103] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:08,103] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:08,103] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:08,103] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:08,103] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:09,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_1_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:29:09,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:09,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:09,791] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:09,791] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:09,791] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:09,791] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:09,811] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:11,163] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:11,164] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:11,164] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:11,164] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:11,164] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:11,164] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:11,183] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:12,397] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:29:12,423] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:12,424] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:12,424] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:12,424] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:12,424] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:12,424] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:12,442] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:13,682] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:13,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:13,683] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:13,683] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:13,683] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:13,683] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:13,683] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:13,684] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:15,404] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:15,405] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:15,405] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:15,405] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:15,405] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:15,405] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:15,405] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:15,405] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:17,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:17,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:17,143] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:17,143] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:17,143] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:17,143] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:17,161] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_16_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:18,352] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:18,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:18,353] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:18,353] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:18,354] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:18,354] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:18,372] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:19,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:19,671] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:19,672] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:19,672] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:19,672] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:19,672] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:19,672] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:19,672] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_18_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:21,384] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:21,385] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:21,385] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:21,385] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:21,385] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:21,385] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:21,404] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:22,674] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:22,675] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:22,675] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:22,675] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:22,675] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:22,675] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:22,695] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:24,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:24,013] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:24,013] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:24,013] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:24,013] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:24,013] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:24,013] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:24,013] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:25,678] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:25,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:25,679] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:25,679] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:25,679] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:25,679] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:25,698] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:27,010] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:27,011] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:27,011] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:27,011] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:27,011] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:27,012] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:27,031] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_15_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:28,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:28,342] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:28,342] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:28,342] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:28,342] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:28,342] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:28,342] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:28,342] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_21_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:30,029] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:29:30,116] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:30,117] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:30,117] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:30,117] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:30,117] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:30,117] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:30,135] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:31,362] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:31,363] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:31,363] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:31,363] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:31,363] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:31,363] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:31,363] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:31,363] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:33,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:29:33,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_1_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:29:33,063] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_6_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:29:33,063] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_1_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:29:33,171] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:33,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:33,172] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:33,172] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:33,172] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:33,172] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:33,172] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:33,172] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:35,977] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_7_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:29:36,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:36,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:36,001] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:36,001] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:36,001] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:36,001] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:36,021] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_20_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:37,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:37,352] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:37,353] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:37,353] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:37,353] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:37,353] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:37,353] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:37,353] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:39,008] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5202_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:29:39,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:39,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:39,031] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:39,031] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:39,031] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:39,031] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:39,050] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:40,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:40,360] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:40,360] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:40,360] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:40,360] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:40,360] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:40,360] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:40,360] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:42,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:42,116] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:42,116] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:42,116] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:42,116] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:42,116] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:42,134] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:43,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5203_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:29:43,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:43,444] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:43,444] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:43,444] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:43,444] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:43,444] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:43,444] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:43,444] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:46,635] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:46,636] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:46,636] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:46,636] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:46,636] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:46,636] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:46,655] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:47,990] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:47,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:47,991] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:47,991] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:47,991] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:47,992] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:47,992] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:47,992] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_5_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:49,689] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:49,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:49,690] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:49,690] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:49,690] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:49,690] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:49,710] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:50,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:29:50,996] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:50,997] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:50,997] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:50,997] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:50,997] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:50,997] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:51,015] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:52,213] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:29:52,302] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:52,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:52,304] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:52,304] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:52,304] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:52,304] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:52,304] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:52,304] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:53,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:53,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:53,977] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:53,977] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:53,977] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:53,977] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:53,977] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:53,977] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:55,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:55,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:55,723] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:55,723] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:55,723] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:55,723] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:55,723] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:55,723] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_2_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:57,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1.fastp_bismark_bt2_pe.deduplicated.bam [2021-06-08 22:29:57,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:29:57,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:29:57,406] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:29:57,485] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:57,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:57,486] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:57,486] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:57,486] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:57,486] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:57,486] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:57,486] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:59,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHH_CTOB_5202_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:59,158] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHH_CTOB_5202_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:59,230] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:59,231] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:59,231] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:59,231] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:59,231] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:59,231] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:59,231] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:29:59,231] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:00,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:00,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:00,974] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:00,974] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:00,975] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:00,975] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:00,975] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:00,975] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:02,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:02,713] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:02,713] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:02,713] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:02,713] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:02,714] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:02,732] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:03,998] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:03,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:03,999] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:03,999] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:03,999] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:03,999] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:03,999] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:03,999] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_6_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:05,684] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:05,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:05,685] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:05,685] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:05,685] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:05,685] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:05,704] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_24_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:07,045] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:07,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:07,047] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:07,047] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:07,047] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:07,047] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:07,047] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:07,047] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:08,740] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:08,741] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:08,741] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:08,741] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:08,741] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:08,741] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:08,760] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_zr3644_19_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:10,039] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:10,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:10,041] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:10,041] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:10,041] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:10,041] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:10,041] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:10,041] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_3_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:11,745] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:11,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:11,746] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:11,746] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:11,746] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:11,746] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:11,766] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_13_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:13,117] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:13,118] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:13,118] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:13,118] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:13,118] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:13,118] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:13,142] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:14,794] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:14,795] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:14,795] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:14,795] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:14,795] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:14,795] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:14,795] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:14,795] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_17_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:16,538] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:16,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:16,540] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:16,540] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:16,540] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:16,540] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:16,540] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:16,540] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_12_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:18,255] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:18,256] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:18,257] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:18,257] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:18,257] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:18,257] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:18,257] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:18,257] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_5201_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:21,089] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_5_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:30:21,145] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:21,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:21,146] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:21,146] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:21,146] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:21,146] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:21,146] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:21,146] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OT_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:22,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:22,868] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:22,868] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:22,868] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:22,868] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:22,868] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:22,868] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:22,868] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3534_7_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:24,611] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:24,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:24,612] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:24,612] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:24,612] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:24,612] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:24,612] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:24,612] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_5901_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:27,799] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_3_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:30:27,875] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:27,876] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:27,876] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:27,876] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:27,877] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:27,877] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:27,877] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:27,877] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_OB_zr3644_14_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:29,631] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:29,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:29,632] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:29,632] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:29,632] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:29,632] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:29,632] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:29,632] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_zr3644_11_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:31,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:30:31,284] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:31,285] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:31,285] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:31,285] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:31,285] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:31,285] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:31,305] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_zr3644_22_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:32,686] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OB_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:32,688] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OB_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:32,688] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OB_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:32,688] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OB_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:32,688] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OB_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:32,688] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OB_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:32,688] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OB_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:32,688] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OB_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:35,697] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:30:35,718] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:35,719] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:35,720] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:35,720] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:35,720] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:35,720] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:35,739] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_zr3644_8_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:36,990] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:36,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:36,992] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:36,992] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:36,992] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:36,992] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:37,011] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3644_1_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:38,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3534_4_R1.fastp_bismark_bt2_PE_report.html [2021-06-08 22:30:38,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5201_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:30:38,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1.fastp_bismark_bt2_pe.bam [2021-06-08 22:30:38,349] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_OT_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:38,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_OT_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:38,350] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_OT_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:38,350] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_OT_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:38,350] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_OT_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:38,350] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_OT_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:38,350] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_OT_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:38,350] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_OT_3503_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:41,455] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:41,456] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:41,456] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:41,456] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:41,456] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:41,456] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:41,456] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:41,456] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_zr3644_10_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:43,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:43,204] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:43,205] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:43,205] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:43,205] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:43,205] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:43,223] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_zr3534_9_R1.fastp_bismark_bt2_pe.deduplicated.txt [2021-06-08 22:30:48,381] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2021-06-08 22:30:48,390] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2021-06-08 22:30:48,395] multiqc [DEBUG ] No samples found: custom_content [2021-06-08 22:30:48,404] multiqc [DEBUG ] No samples found: conpair [2021-06-08 22:30:48,430] multiqc [DEBUG ] No samples found: peddy [2021-06-08 22:30:48,545] multiqc [DEBUG ] No samples found: methylQA [2021-06-08 22:30:48,555] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-06-08 22:30:48,641] multiqc [DEBUG ] No samples found: qualimap [2021-06-08 22:30:48,674] multiqc [DEBUG ] No samples found: preseq [2021-06-08 22:30:48,693] multiqc [DEBUG ] No samples found: quast [2021-06-08 22:30:48,724] multiqc [DEBUG ] No samples found: qorts [2021-06-08 22:30:48,744] multiqc [DEBUG ] No samples found: rna_seqc [2021-06-08 22:30:48,771] multiqc [DEBUG ] No samples found: rsem [2021-06-08 22:30:48,803] multiqc [DEBUG ] No samples found: rseqc [2021-06-08 22:30:48,861] multiqc [DEBUG ] No samples found: busco [2021-06-08 22:30:48,924] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-06-08 22:30:48,934] multiqc [DEBUG ] No samples found: disambiguate [2021-06-08 22:30:48,958] multiqc [DEBUG ] No samples found: supernova [2021-06-08 22:30:49,083] multiqc [DEBUG ] No samples found: deeptools [2021-06-08 22:30:49,134] multiqc [DEBUG ] No samples found: sargasso [2021-06-08 22:30:49,183] multiqc [DEBUG ] No samples found: verifybamid [2021-06-08 22:30:49,229] multiqc [DEBUG ] No samples found: mirtrace [2021-06-08 22:30:49,268] multiqc [DEBUG ] No samples found: happy [2021-06-08 22:30:49,291] multiqc [DEBUG ] No samples found: homer [2021-06-08 22:30:49,317] multiqc [DEBUG ] No samples found: macs2 [2021-06-08 22:30:49,326] multiqc [DEBUG ] No samples found: theta2 [2021-06-08 22:30:49,353] multiqc [DEBUG ] No samples found: snpeff [2021-06-08 22:30:49,390] multiqc [DEBUG ] No samples found: gatk [2021-06-08 22:30:49,400] multiqc [DEBUG ] No samples found: htseq [2021-06-08 22:30:49,428] multiqc [DEBUG ] No samples found: bcftools [2021-06-08 22:30:49,438] multiqc [DEBUG ] No samples found: featureCounts [2021-06-08 22:30:49,450] multiqc [DEBUG ] No samples found: fgbio [2021-06-08 22:30:49,459] multiqc [DEBUG ] No samples found: dedup [2021-06-08 22:30:49,472] multiqc [DEBUG ] No samples found: damageprofiler [2021-06-08 22:30:49,651] multiqc [DEBUG ] No samples found: biobambam2 [2021-06-08 22:30:49,661] multiqc [DEBUG ] No samples found: mtnucratio [2021-06-08 22:30:49,667] multiqc [DEBUG ] No samples found: picard [2021-06-08 22:30:49,694] multiqc [DEBUG ] No samples found: prokka [2021-06-08 22:30:49,721] multiqc [DEBUG ] No samples found: samblaster [2021-06-08 22:30:49,772] multiqc [DEBUG ] No samples found: samtools [2021-06-08 22:30:49,782] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-06-08 22:30:49,793] multiqc [DEBUG ] No samples found: bamtools [2021-06-08 22:30:49,803] multiqc [DEBUG ] No samples found: jellyfish [2021-06-08 22:30:49,818] multiqc [DEBUG ] No samples found: vcftools [2021-06-08 22:30:49,850] multiqc [DEBUG ] No samples found: longranger [2021-06-08 22:30:49,883] multiqc [DEBUG ] No samples found: stacks [2021-06-08 22:30:49,925] multiqc [DEBUG ] No samples found: bbmap [2021-06-08 22:30:50,179] multiqc.modules.bismark.bismark [INFO ] Found 46 bismark alignment reports [2021-06-08 22:30:50,183] multiqc.modules.bismark.bismark [INFO ] Found 46 bismark dedup reports [2021-06-08 22:30:50,184] multiqc.modules.bismark.bismark [INFO ] Found 46 bismark methextract reports [2021-06-08 22:30:50,276] multiqc [DEBUG ] No samples found: biscuit [2021-06-08 22:30:50,303] multiqc [DEBUG ] No samples found: hicexplorer [2021-06-08 22:30:50,344] multiqc [DEBUG ] No samples found: hicup [2021-06-08 22:30:50,383] multiqc [DEBUG ] No samples found: hicpro [2021-06-08 22:30:50,407] multiqc [DEBUG ] No samples found: salmon [2021-06-08 22:30:50,433] multiqc [DEBUG ] No samples found: kallisto [2021-06-08 22:30:50,463] multiqc [DEBUG ] No samples found: slamdunk [2021-06-08 22:30:50,491] multiqc [DEBUG ] No samples found: star [2021-06-08 22:30:50,506] multiqc [DEBUG ] No samples found: hisat2 [2021-06-08 22:30:50,537] multiqc [DEBUG ] No samples found: tophat [2021-06-08 22:30:50,549] multiqc [DEBUG ] No samples found: bowtie2 [2021-06-08 22:30:50,574] multiqc [DEBUG ] No samples found: bowtie1 [2021-06-08 22:30:50,584] multiqc [DEBUG ] No samples found: kat [2021-06-08 22:30:50,593] multiqc [DEBUG ] No samples found: leehom [2021-06-08 22:30:50,615] multiqc [DEBUG ] No samples found: adapterRemoval [2021-06-08 22:30:50,624] multiqc [DEBUG ] No samples found: clipandmerge [2021-06-08 22:30:50,644] multiqc [DEBUG ] No samples found: cutadapt [2021-06-08 22:30:50,654] multiqc [DEBUG ] No samples found: flexbar [2021-06-08 22:30:50,688] multiqc [DEBUG ] No samples found: trimmomatic [2021-06-08 22:30:50,699] multiqc [DEBUG ] No samples found: skewer [2021-06-08 22:30:50,710] multiqc [DEBUG ] No samples found: sortmerna [2021-06-08 22:30:50,744] multiqc [DEBUG ] No samples found: biobloomtools [2021-06-08 22:30:50,806] multiqc [DEBUG ] No samples found: fastq_screen [2021-06-08 22:30:50,849] multiqc [DEBUG ] No samples found: afterqc [2021-06-08 22:30:50,873] multiqc [DEBUG ] No samples found: fastp [2021-06-08 22:30:50,893] multiqc [DEBUG ] No samples found: fastqc [2021-06-08 22:30:50,920] multiqc [DEBUG ] No samples found: minionqc [2021-06-08 22:30:50,948] multiqc [DEBUG ] No samples found: mosdepth [2021-06-08 22:30:51,022] multiqc [DEBUG ] No samples found: clusterflow [2021-06-08 22:30:51,043] multiqc [DEBUG ] No samples found: bcl2fastq [2021-06-08 22:30:51,086] multiqc [DEBUG ] No samples found: interop [2021-06-08 22:30:51,113] multiqc [DEBUG ] No samples found: flash [2021-06-08 22:30:51,134] multiqc [DEBUG ] No samples found: seqyclean [2021-06-08 22:30:51,303] multiqc [INFO ] Compressing plot data [2021-06-08 22:30:51,950] multiqc [INFO ] Report : multiqc_report.html [2021-06-08 22:30:51,950] multiqc [INFO ] Data : multiqc_data [2021-06-08 22:30:51,951] multiqc [DEBUG ] Moving data file from '/tmp/tmp7v7m3g02/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/sr320/060821-bigC/multiqc_data' [2021-06-08 22:30:51,952] multiqc [DEBUG ] Moving data file from '/tmp/tmp7v7m3g02/multiqc_data/multiqc_bismark_alignment.txt' to '/gscratch/scrubbed/sr320/060821-bigC/multiqc_data' [2021-06-08 22:30:51,953] multiqc [DEBUG ] Moving data file from '/tmp/tmp7v7m3g02/multiqc_data/multiqc_bismark_dedup.txt' to '/gscratch/scrubbed/sr320/060821-bigC/multiqc_data' [2021-06-08 22:30:51,953] multiqc [DEBUG ] Moving data file from '/tmp/tmp7v7m3g02/multiqc_data/multiqc_bismark_methextract.txt' to '/gscratch/scrubbed/sr320/060821-bigC/multiqc_data' [2021-06-08 22:30:51,955] multiqc [DEBUG ] Moving data file from '/tmp/tmp7v7m3g02/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/sr320/060821-bigC/multiqc_data' [2021-06-08 22:30:51,955] multiqc [DEBUG ] Moving data file from '/tmp/tmp7v7m3g02/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/sr320/060821-bigC/multiqc_data' [2021-06-08 22:30:51,956] multiqc [DEBUG ] Moving data file from '/tmp/tmp7v7m3g02/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/sr320/060821-bigC/multiqc_data' [2021-06-08 22:30:53,278] multiqc [INFO ] MultiQC complete