File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated chgs Unmethylated chgs Methylated CHHs Unmethylated CHHs 0501_R1.fastp_bismark_bt2_pe.bam 100000 59640 30009 10351 0 3083 56557 1859705 29965 193629 2901 301308 13262 1318640 0502_R1.fastp_bismark_bt2_pe.bam 100000 59284 30449 10267 0 2824 56460 1880911 29142 193905 3310 305640 13974 1334940 0503_R1.fastp_bismark_bt2_pe.bam 100000 59416 30587 9997 0 2994 56422 1849861 31012 187357 3012 296163 14206 1318111 3501_R1.fastp_bismark_bt2_pe.bam 100000 60904 28435 10661 0 3124 57780 1860250 27690 194133 3151 298113 13309 1323854 3502_R1.fastp_bismark_bt2_pe.bam 100000 61008 28396 10596 0 3289 57719 1914887 28773 199776 3084 310413 12967 1359874 3503_R1.fastp_bismark_bt2_pe.bam 100000 57332 32794 9874 0 2434 54898 1846095 29111 190000 2883 297786 12836 1313479 5201_R1.fastp_bismark_bt2_pe.bam 100000 60895 28803 10302 0 3072 57823 1739031 25095 178413 2450 273483 10982 1248608 5202_R1.fastp_bismark_bt2_pe.bam 100000 60899 28595 10505 1 2956 57943 1975314 28144 210593 3074 323279 13166 1397058 5203_R1.fastp_bismark_bt2_pe.bam 100000 58371 31612 10017 0 2728 55643 1813834 29295 186579 3166 290961 14301 1289532 5901_R1.fastp_bismark_bt2_pe.bam 100000 59788 29986 10226 0 3275 56513 1891864 30700 199778 3083 309087 13000 1336216 5902_R1.fastp_bismark_bt2_pe.bam 100000 60658 29074 10268 0 3179 57479 1978606 28775 207515 3057 321019 13217 1405023 5903_R1.fastp_bismark_bt2_pe.bam 100000 59448 30289 10263 0 2372 57076 1980266 29502 213177 4260 323900 18399 1391028 zr3534_10_R1.fastp_bismark_bt2_pe.bam 100000 61864 21587 16549 0 6408 55456 1340768 17015 157144 1048 232950 4335 928276 zr3534_1_R1.fastp_bismark_bt2_pe.bam 100000 61618 22474 15908 0 6726 54892 1330789 17210 154648 1071 229591 4667 923602 zr3534_2_R1.fastp_bismark_bt2_pe.bam 100000 61056 22398 16546 0 6107 54949 1337084 16934 156596 1053 230643 4861 926997 zr3534_3_R1.fastp_bismark_bt2_pe.bam 100000 60805 23295 15900 0 5850 54955 1361137 20085 153239 1230 233513 5181 947889 zr3534_4_R1.fastp_bismark_bt2_pe.bam 100000 61751 22130 16118 1 6492 55259 1334307 18547 153522 1068 230168 4983 926019 zr3534_5_R1.fastp_bismark_bt2_pe.bam 100000 61435 22294 16271 0 6349 55086 1321450 18706 149852 1142 227304 4868 919578 zr3534_6_R1.fastp_bismark_bt2_pe.bam 100000 60946 23409 15645 0 6386 54560 1329087 17277 152699 1077 227992 4605 925437 zr3534_7_R1.fastp_bismark_bt2_pe.bam 100000 61281 23002 15717 0 5803 55478 1350779 17175 153801 1062 231013 5015 942713 zr3534_8_R1.fastp_bismark_bt2_pe.bam 100000 61749 21889 16362 0 7118 54631 1286222 16614 147209 991 220589 4536 896283 zr3534_9_R1.fastp_bismark_bt2_pe.bam 100000 61884 21378 16737 1 6157 55727 1352824 17147 158036 1109 235705 4655 936172 zr3644_10_R1.fastp_bismark_bt2_pe.bam 100000 61153 21890 16956 1 4006 57147 1367044 18292 158774 1099 236251 4850 947778 zr3644_11_R1.fastp_bismark_bt2_pe.bam 100000 60960 21931 17108 1 4074 56886 1358219 17603 157564 1113 234678 5036 942225 zr3644_12_R1.fastp_bismark_bt2_pe.bam 100000 61367 22024 16609 0 3889 57478 1353399 16221 152373 1001 225562 4482 953760 zr3644_13_R1.fastp_bismark_bt2_pe.bam 100000 61792 21880 16328 0 4450 57342 1406264 18175 160953 1149 241126 5038 979823 zr3644_14_R1.fastp_bismark_bt2_pe.bam 100000 62088 21390 16521 1 4054 58034 1392769 20439 156912 1189 238595 4943 970691 zr3644_15_R1.fastp_bismark_bt2_pe.bam 100000 61418 21905 16677 0 3982 57436 1385235 19228 157318 1169 237701 4747 965072 zr3644_16_R1.fastp_bismark_bt2_pe.bam 100000 61736 20553 17711 0 4307 57429 1314284 17404 152417 1122 227151 4762 911428 zr3644_17_R1.fastp_bismark_bt2_pe.bam 100000 61805 20526 17669 0 4403 57402 1379883 18203 162900 1177 239940 4744 952919 zr3644_18_R1.fastp_bismark_bt2_pe.bam 100000 62397 20763 16840 0 3891 58506 1400104 18495 162988 1162 242924 4926 969609 zr3644_19_R1.fastp_bismark_bt2_pe.bam 100000 61402 21445 17153 0 3620 57782 1391498 17611 160205 1159 239409 5021 968093 zr3644_1_R1.fastp_bismark_bt2_pe.bam 100000 62534 20244 17222 0 4122 58412 1373705 16457 160479 1093 238266 4561 952849 zr3644_20_R1.fastp_bismark_bt2_pe.bam 100000 61592 21962 16444 2 4189 57403 1402572 17549 162343 1151 241099 5152 975278 zr3644_21_R1.fastp_bismark_bt2_pe.bam 100000 61354 22075 16570 1 4196 57158 1396963 18229 160395 1108 240305 4713 972213 zr3644_22_R1.fastp_bismark_bt2_pe.bam 100000 61838 21374 16787 1 4048 57790 1400184 17967 162565 1195 241491 4901 972065 zr3644_23_R1.fastp_bismark_bt2_pe.bam 100000 61316 21132 17552 0 4107 57209 1354323 17488 157505 1183 233818 4909 939420 zr3644_24_R1.fastp_bismark_bt2_pe.bam 100000 62315 21022 16663 0 4182 58133 1405268 18046 163678 1163 242659 4781 974941 zr3644_2_R1.fastp_bismark_bt2_pe.bam 100000 61033 22427 16540 0 4139 56894 1418146 18079 163292 1195 242611 4889 988080 zr3644_3_R1.fastp_bismark_bt2_pe.bam 100000 61161 21806 17033 0 3670 57491 1386996 17858 160089 1119 237922 4720 965288 zr3644_4_R1.fastp_bismark_bt2_pe.bam 100000 61250 21911 16839 0 4161 57089 1371032 17454 155258 1054 232556 4473 960237 zr3644_5_R1.fastp_bismark_bt2_pe.bam 100000 61442 21828 16729 1 3845 57597 1398234 17568 159880 1182 239225 5075 975304 zr3644_6_R1.fastp_bismark_bt2_pe.bam 100000 61890 21393 16717 0 3916 57974 1393231 17907 159814 1145 237802 4957 971606 zr3644_7_R1.fastp_bismark_bt2_pe.bam 100000 60610 22770 16620 0 3499 57111 1384445 18084 158018 1133 236329 4741 966140 zr3644_8_R1.fastp_bismark_bt2_pe.bam 100000 61057 21754 17188 1 3698 57359 1371764 17946 158229 1112 236164 5133 953180 zr3644_9_R1.fastp_bismark_bt2_pe.bam 100000 61092 20677 18231 0 4373 56719 1283697 17534 147837 1072 221612 4784 890858