5201_R1.fastp_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 57823 lines in total Total number of methylation call strings processed: 115646 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1739031 Total methylated C's in CpG context: 25095 Total methylated C's in CHG context: 2450 Total methylated C's in CHH context: 10982 Total C to T conversions in CpG context: 178413 Total C to T conversions in CHG context: 273483 Total C to T conversions in CHH context: 1248608 C methylated in CpG context: 12.3% C methylated in CHG context: 0.9% C methylated in CHH context: 0.9%