Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
60895 |
| Pairs without alignments under any condition |
28803 |
| Pairs that did not map uniquely |
10302 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2482069 |
| Methylated C's in CpG context |
35234 |
| Methylated C's in CHG context |
2928 |
| Methylated C's in CHH context |
13361 |
| Methylated C's in Unknown context |
286 |
| Unmethylated C's in CpG context |
254332 |
| Unmethylated C's in CHG context |
390650 |
| Unmethylated C's in CHH context |
1785564 |
| Unmethylated C's in Unknown context |
7876 |
| Percentage methylation (CpG context) |
12.2% |
| Percentage methylation (CHG context) |
0.7% |
| Percentage methylation (CHH context) |
0.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
30438 |
original top strand |
| CTOT |
11 |
complementary to original top strand |
| CTOB |
7 |
complementary to original bottom strand |
| OB |
30439 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
60895 |
| Unique alignments |
57823 |
| Duplicates removed |
3072 |
| Duplicated alignments were found at 2996 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1739031 |
| Methylated C's in CpG context |
25095 |
| Methylated C's in CHG context |
2450 |
| Methylated C's in CHH context |
10982 |
| Unmethylated C's in CpG context |
178413 |
| Unmethylated C's in CHG context |
273483 |
| Unmethylated C's in CHH context |
1248608 |
| Percentage methylation (CpG context) |
12.3% |
| Percentage methylation (CHG context) |
0.9% |
| Percentage methylation (CHH context) |
0.9% |
|
|
M-Bias Plot
