Alignment Stats
| Sequence pairs analysed in total |
100000 |
| Paired-end alignments with a unique best hit |
60904 |
| Pairs without alignments under any condition |
28435 |
| Pairs that did not map uniquely |
10661 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
2586683 |
| Methylated C's in CpG context |
38139 |
| Methylated C's in CHG context |
3842 |
| Methylated C's in CHH context |
16449 |
| Methylated C's in Unknown context |
294 |
| Unmethylated C's in CpG context |
269842 |
| Unmethylated C's in CHG context |
414374 |
| Unmethylated C's in CHH context |
1844037 |
| Unmethylated C's in Unknown context |
7767 |
| Percentage methylation (CpG context) |
12.4% |
| Percentage methylation (CHG context) |
0.9% |
| Percentage methylation (CHH context) |
0.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
30342 |
original top strand |
| CTOT |
7 |
complementary to original top strand |
| CTOB |
11 |
complementary to original bottom strand |
| OB |
30544 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
60904 |
| Unique alignments |
57780 |
| Duplicates removed |
3124 |
| Duplicated alignments were found at 3038 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1860250 |
| Methylated C's in CpG context |
27690 |
| Methylated C's in CHG context |
3151 |
| Methylated C's in CHH context |
13309 |
| Unmethylated C's in CpG context |
194133 |
| Unmethylated C's in CHG context |
298113 |
| Unmethylated C's in CHH context |
1323854 |
| Percentage methylation (CpG context) |
12.5% |
| Percentage methylation (CHG context) |
1.0% |
| Percentage methylation (CHH context) |
1.0% |
|
|
M-Bias Plot
