0501_R1.fastp_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 56557 lines in total Total number of methylation call strings processed: 113114 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1859705 Total methylated C's in CpG context: 29965 Total methylated C's in CHG context: 2901 Total methylated C's in CHH context: 13262 Total C to T conversions in CpG context: 193629 Total C to T conversions in CHG context: 301308 Total C to T conversions in CHH context: 1318640 C methylated in CpG context: 13.4% C methylated in CHG context: 1.0% C methylated in CHH context: 1.0%