Loading report..

Highlight Samples

Regex mode off

    Rename Samples

    Click here for bulk input.

    Paste two columns of a tab-delimited table here (eg. from Excel).

    First column should be the old name, second column the new name.

    Regex mode off

      Show / Hide Samples

      Regex mode off

        Export Plots

        px
        px
        X

        Download the raw data used to create the plots in this report below:

        Note that additional data was saved in multiqc_data when this report was generated.

        Choose Plots

        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Save Settings

        You can save the toolbox settings for this report to the browser.

        Load Settings

        Choose a saved report profile from the dropdown box below:

        About MultiQC

        This report was generated using MultiQC, version 1.8

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2021-06-03, 16:19 based on data in: /gscratch/scrubbed/sr320/060321-oly

        General Statistics

        Showing 8/8 rows and 6/8 columns.
        Sample Name% mCpG% mCHG% mCHHM C's% Dups% Aligned
        1_ATCACG_L001_R1_001
        29.3%
        2.7%
        14.2%
        21.7
        11.8%
        47.1%
        2_CGATGT_L001_R1_001
        28.7%
        3.5%
        14.6%
        26.7
        13.0%
        46.6%
        3_TTAGGC_L001_R1_001
        29.3%
        2.6%
        14.1%
        26.4
        13.8%
        47.1%
        4_TGACCA_L001_R1_001
        29.9%
        2.5%
        13.9%
        26.5
        12.2%
        47.0%
        5_ACAGTG_L001_R1_001
        28.5%
        2.8%
        14.3%
        27.9
        13.7%
        46.8%
        6_GCCAAT_L001_R1_001
        27.8%
        3.2%
        15.2%
        27.9
        13.1%
        46.8%
        7_CAGATC_L001_R1_001
        28.3%
        2.5%
        14.2%
        23.7
        10.9%
        46.8%
        8_ACTTGA_L001_R1_001
        26.4%
        2.7%
        14.1%
        31.6
        13.8%
        46.5%

        Bismark

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.

        Alignment Rates

        loading..

        Deduplication

        loading..

        Strand Alignment

        loading..

        Cytosine Methylation

        loading..

        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

        loading..

        MultiQC v1.8 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.