[2021-06-03 16:20:04,474] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2021-06-03 16:20:04,474] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/sr320/.multiqc_config.yaml [2021-06-03 16:20:04,474] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-06-03 16:20:04,474] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-06-03 16:20:09,622] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2021-06-03 16:20:09,623] multiqc [INFO ] This is MultiQC v1.8 [2021-06-03 16:20:09,623] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-06-03 16:20:09,623] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/sr320/060321-oly [2021-06-03 16:20:09,623] multiqc [INFO ] Template : default [2021-06-03 16:20:09,623] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2021-06-03 16:20:09,623] multiqc [INFO ] Searching : /gscratch/scrubbed/sr320/060321-oly [2021-06-03 16:20:09,625] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2021-06-03 16:20:09,625] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpfhvise7j [2021-06-03 16:20:10,344] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7_CAGATC_L001_R1_001_trimmed_bismark_bt2.bam [2021-06-03 16:20:10,526] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:10,529] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:10,529] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:10,529] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:10,529] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:10,530] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:10,565] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:12,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:12,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:12,298] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:12,298] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:12,298] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:12,298] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:12,298] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:12,298] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:14,155] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.bam [2021-06-03 16:20:14,155] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-06-03 16:20:14,155] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6_GCCAAT_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-06-03 16:20:14,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:14,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:14,299] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:14,299] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:14,300] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:14,300] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:14,300] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:14,300] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:17,097] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:17,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:17,098] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:17,098] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:17,098] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:17,098] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:17,098] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:17,098] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:19,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-06-03 16:20:19,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-06-03 16:20:19,523] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:19,525] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:19,525] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:19,525] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:19,525] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:19,525] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:19,525] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:19,525] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:22,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2_CGATGT_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-06-03 16:20:22,286] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:22,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:22,287] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:22,287] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:22,288] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:22,288] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:22,288] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:22,288] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:24,621] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5_ACAGTG_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-06-03 16:20:24,621] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.bam [2021-06-03 16:20:24,653] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:24,654] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:24,654] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:24,654] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:24,654] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:24,654] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:24,654] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:24,654] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:26,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.bam [2021-06-03 16:20:26,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:26,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:26,536] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:26,536] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:26,536] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:26,536] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:26,536] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:26,536] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:28,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:28,463] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:28,463] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:28,463] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:28,464] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:28,464] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:28,464] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:28,464] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:30,330] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: bismark_summary_report.html [2021-06-03 16:20:30,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:30,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:30,354] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:30,354] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:30,354] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:30,354] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:30,374] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:31,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:31,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:31,707] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:31,707] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:31,707] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:31,707] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:31,726] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:33,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:33,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:33,073] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:33,073] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:33,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:33,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:33,073] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:33,073] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:34,936] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:34,938] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:34,938] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:34,938] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:34,938] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:34,938] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:34,971] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:36,466] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4_TGACCA_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-06-03 16:20:36,466] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7_CAGATC_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-06-03 16:20:36,466] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-06-03 16:20:36,576] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:36,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:36,577] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:36,577] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:36,577] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:36,577] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:36,578] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:36,578] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:38,777] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:38,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:38,779] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:38,779] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:38,779] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:38,779] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:38,779] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:38,779] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:40,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1_ATCACG_L001_R1_001_trimmed_bismark_bt2.bam [2021-06-03 16:20:40,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-06-03 16:20:40,682] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:40,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:40,683] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:40,683] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:40,684] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:40,684] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:40,708] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:42,414] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:42,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:42,415] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:42,415] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:42,415] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:42,415] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:42,442] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:43,732] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-06-03 16:20:43,783] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:43,784] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:43,784] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:43,784] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:43,784] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:43,785] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:43,785] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:43,785] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:45,715] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:45,716] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:45,717] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:45,717] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:45,717] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:45,717] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:45,717] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:45,717] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:48,454] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:48,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:48,455] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:48,456] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:48,456] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:48,456] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:48,489] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:49,982] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8_ACTTGA_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-06-03 16:20:50,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:50,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:50,064] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:50,064] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:50,064] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:50,064] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:50,097] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:51,742] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.bam [2021-06-03 16:20:51,742] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3_TTAGGC_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-06-03 16:20:51,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1_ATCACG_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-06-03 16:20:51,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2_CGATGT_L001_R1_001_trimmed_bismark_bt2.bam [2021-06-03 16:20:51,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:51,829] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:51,829] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:51,829] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:51,829] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:51,829] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:51,861] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:53,476] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:53,477] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:53,477] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:53,477] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:53,477] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:53,477] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:53,477] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:53,477] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:55,611] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:55,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:55,612] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:55,612] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:55,612] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:55,612] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:55,612] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:55,612] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOB_8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:57,478] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: job.sh [2021-06-03 16:20:57,579] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:57,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:57,581] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:57,581] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:57,581] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:57,581] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:57,581] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:20:57,581] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:00,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:00,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:00,333] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:00,333] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:00,334] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:00,334] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:00,364] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:01,621] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-06-03 16:21:01,621] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-06-03 16:21:01,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CpG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:01,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CpG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:01,842] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CpG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:01,843] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CpG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:01,843] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CpG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:01,843] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CpG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:01,843] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CpG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:01,843] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CpG_CTOT_6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:03,799] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:03,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:03,800] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:03,800] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:03,800] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:03,800] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:03,834] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:05,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:05,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:05,762] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:05,762] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:05,762] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:05,762] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:05,763] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:05,763] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOT_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:08,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4_TGACCA_L001_R1_001_trimmed_bismark_bt2.bam [2021-06-03 16:21:08,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:08,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:08,569] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:08,569] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:08,569] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:08,570] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:08,570] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:08,570] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:10,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:10,839] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:10,839] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:10,839] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:10,839] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:10,839] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:10,839] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:10,840] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:13,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CHG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:13,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CHG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:13,589] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: CHG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:13,589] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: CHG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:13,589] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: CHG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:13,590] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: CHG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:13,590] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: CHG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:13,590] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: CHG_CTOB_4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.txt [2021-06-03 16:21:20,401] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2021-06-03 16:21:20,414] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2021-06-03 16:21:20,431] multiqc [DEBUG ] No samples found: custom_content [2021-06-03 16:21:20,497] multiqc [DEBUG ] No samples found: conpair [2021-06-03 16:21:20,571] multiqc [DEBUG ] No samples found: peddy [2021-06-03 16:21:20,665] multiqc [DEBUG ] No samples found: methylQA [2021-06-03 16:21:20,688] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-06-03 16:21:20,798] multiqc [DEBUG ] No samples found: qualimap [2021-06-03 16:21:20,827] multiqc [DEBUG ] No samples found: preseq [2021-06-03 16:21:20,856] multiqc [DEBUG ] No samples found: quast [2021-06-03 16:21:20,877] multiqc [DEBUG ] No samples found: qorts [2021-06-03 16:21:20,917] multiqc [DEBUG ] No samples found: rna_seqc [2021-06-03 16:21:20,942] multiqc [DEBUG ] No samples found: rsem [2021-06-03 16:21:21,140] multiqc [DEBUG ] No samples found: rseqc [2021-06-03 16:21:21,184] multiqc [DEBUG ] No samples found: busco [2021-06-03 16:21:21,243] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-06-03 16:21:21,252] multiqc [DEBUG ] No samples found: disambiguate [2021-06-03 16:21:21,296] multiqc [DEBUG ] No samples found: supernova [2021-06-03 16:21:21,405] multiqc [DEBUG ] No samples found: deeptools [2021-06-03 16:21:21,443] multiqc [DEBUG ] No samples found: sargasso [2021-06-03 16:21:21,486] multiqc [DEBUG ] No samples found: verifybamid [2021-06-03 16:21:21,518] multiqc [DEBUG ] No samples found: mirtrace [2021-06-03 16:21:21,549] multiqc [DEBUG ] No samples found: happy [2021-06-03 16:21:21,581] multiqc [DEBUG ] No samples found: homer [2021-06-03 16:21:21,599] multiqc [DEBUG ] No samples found: macs2 [2021-06-03 16:21:21,607] multiqc [DEBUG ] No samples found: theta2 [2021-06-03 16:21:21,642] multiqc [DEBUG ] No samples found: snpeff [2021-06-03 16:21:21,692] multiqc [DEBUG ] No samples found: gatk [2021-06-03 16:21:21,708] multiqc [DEBUG ] No samples found: htseq [2021-06-03 16:21:21,733] multiqc [DEBUG ] No samples found: bcftools [2021-06-03 16:21:21,741] multiqc [DEBUG ] No samples found: featureCounts [2021-06-03 16:21:21,752] multiqc [DEBUG ] No samples found: fgbio [2021-06-03 16:21:21,759] multiqc [DEBUG ] No samples found: dedup [2021-06-03 16:21:21,791] multiqc [DEBUG ] No samples found: damageprofiler [2021-06-03 16:21:22,027] multiqc [DEBUG ] No samples found: biobambam2 [2021-06-03 16:21:22,062] multiqc [DEBUG ] No samples found: mtnucratio [2021-06-03 16:21:22,068] multiqc [DEBUG ] No samples found: picard [2021-06-03 16:21:22,095] multiqc [DEBUG ] No samples found: prokka [2021-06-03 16:21:22,105] multiqc [DEBUG ] No samples found: samblaster [2021-06-03 16:21:22,173] multiqc [DEBUG ] No samples found: samtools [2021-06-03 16:21:22,197] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-06-03 16:21:22,251] multiqc [DEBUG ] No samples found: bamtools [2021-06-03 16:21:22,261] multiqc [DEBUG ] No samples found: jellyfish [2021-06-03 16:21:22,288] multiqc [DEBUG ] No samples found: vcftools [2021-06-03 16:21:22,309] multiqc [DEBUG ] No samples found: longranger [2021-06-03 16:21:22,337] multiqc [DEBUG ] No samples found: stacks [2021-06-03 16:21:22,392] multiqc [DEBUG ] No samples found: bbmap [2021-06-03 16:21:22,448] multiqc.modules.bismark.bismark [INFO ] Found 8 bismark alignment reports [2021-06-03 16:21:22,451] multiqc.modules.bismark.bismark [INFO ] Found 8 bismark dedup reports [2021-06-03 16:21:22,452] multiqc.modules.bismark.bismark [INFO ] Found 8 bismark methextract reports [2021-06-03 16:21:22,476] multiqc [DEBUG ] No samples found: biscuit [2021-06-03 16:21:22,504] multiqc [DEBUG ] No samples found: hicexplorer [2021-06-03 16:21:22,530] multiqc [DEBUG ] No samples found: hicup [2021-06-03 16:21:22,549] multiqc [DEBUG ] No samples found: hicpro [2021-06-03 16:21:22,556] multiqc [DEBUG ] No samples found: salmon [2021-06-03 16:21:22,585] multiqc [DEBUG ] No samples found: kallisto [2021-06-03 16:21:22,604] multiqc [DEBUG ] No samples found: slamdunk [2021-06-03 16:21:22,625] multiqc [DEBUG ] No samples found: star [2021-06-03 16:21:22,654] multiqc [DEBUG ] No samples found: hisat2 [2021-06-03 16:21:22,666] multiqc [DEBUG ] No samples found: tophat [2021-06-03 16:21:22,681] multiqc [DEBUG ] No samples found: bowtie2 [2021-06-03 16:21:22,701] multiqc [DEBUG ] No samples found: bowtie1 [2021-06-03 16:21:22,708] multiqc [DEBUG ] No samples found: kat [2021-06-03 16:21:22,714] multiqc [DEBUG ] No samples found: leehom [2021-06-03 16:21:22,753] multiqc [DEBUG ] No samples found: adapterRemoval [2021-06-03 16:21:22,760] multiqc [DEBUG ] No samples found: clipandmerge [2021-06-03 16:21:22,779] multiqc [DEBUG ] No samples found: cutadapt [2021-06-03 16:21:22,787] multiqc [DEBUG ] No samples found: flexbar [2021-06-03 16:21:22,822] multiqc [DEBUG ] No samples found: trimmomatic [2021-06-03 16:21:22,833] multiqc [DEBUG ] No samples found: skewer [2021-06-03 16:21:22,839] multiqc [DEBUG ] No samples found: sortmerna [2021-06-03 16:21:22,856] multiqc [DEBUG ] No samples found: biobloomtools [2021-06-03 16:21:22,892] multiqc [DEBUG ] No samples found: fastq_screen [2021-06-03 16:21:22,944] multiqc [DEBUG ] No samples found: afterqc [2021-06-03 16:21:22,974] multiqc [DEBUG ] No samples found: fastp [2021-06-03 16:21:23,001] multiqc [DEBUG ] No samples found: fastqc [2021-06-03 16:21:23,024] multiqc [DEBUG ] No samples found: minionqc [2021-06-03 16:21:23,044] multiqc [DEBUG ] No samples found: mosdepth [2021-06-03 16:21:23,076] multiqc [DEBUG ] No samples found: clusterflow [2021-06-03 16:21:23,122] multiqc [DEBUG ] No samples found: bcl2fastq [2021-06-03 16:21:23,142] multiqc [DEBUG ] No samples found: interop [2021-06-03 16:21:23,169] multiqc [DEBUG ] No samples found: flash [2021-06-03 16:21:23,189] multiqc [DEBUG ] No samples found: seqyclean [2021-06-03 16:21:23,218] multiqc [INFO ] Compressing plot data [2021-06-03 16:21:23,253] multiqc [INFO ] Report : multiqc_report.html [2021-06-03 16:21:23,253] multiqc [INFO ] Data : multiqc_data [2021-06-03 16:21:23,254] multiqc [DEBUG ] Moving data file from '/tmp/tmpfhvise7j/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/sr320/060321-oly/multiqc_data' [2021-06-03 16:21:23,255] multiqc [DEBUG ] Moving data file from '/tmp/tmpfhvise7j/multiqc_data/multiqc_bismark_alignment.txt' to '/gscratch/scrubbed/sr320/060321-oly/multiqc_data' [2021-06-03 16:21:23,256] multiqc [DEBUG ] Moving data file from '/tmp/tmpfhvise7j/multiqc_data/multiqc_bismark_dedup.txt' to '/gscratch/scrubbed/sr320/060321-oly/multiqc_data' [2021-06-03 16:21:23,257] multiqc [DEBUG ] Moving data file from '/tmp/tmpfhvise7j/multiqc_data/multiqc_bismark_methextract.txt' to '/gscratch/scrubbed/sr320/060321-oly/multiqc_data' [2021-06-03 16:21:23,258] multiqc [DEBUG ] Moving data file from '/tmp/tmpfhvise7j/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/sr320/060321-oly/multiqc_data' [2021-06-03 16:21:23,259] multiqc [DEBUG ] Moving data file from '/tmp/tmpfhvise7j/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/sr320/060321-oly/multiqc_data' [2021-06-03 16:21:23,260] multiqc [DEBUG ] Moving data file from '/tmp/tmpfhvise7j/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/sr320/060321-oly/multiqc_data' [2021-06-03 16:21:24,218] multiqc [INFO ] MultiQC complete