Alignment Stats
| Sequences analysed in total |
13949213 |
| Single-end alignments with a unique best hit |
6487669 |
| Sequences without alignments under any condition |
214634 |
| Sequences that did not map uniquely |
7246910 |
| Genomic sequence context not extractable (edges of chromosomes) |
4632 |
|
|
Cytosine Methylation
| Total C's analysed |
36776252 |
| Methylated C's in CpG context |
1160722 |
| Methylated C's in CHG context |
164820 |
| Methylated C's in CHH context |
3984847 |
| Methylated C's in Unknown context |
69576 |
| Unmethylated C's in CpG context |
3227776 |
| Unmethylated C's in CHG context |
5765497 |
| Unmethylated C's in CHH context |
22472590 |
| Unmethylated C's in Unknown context |
122119 |
| Percentage methylation (CpG context) |
26.4% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
15.1% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2531677 |
original top strand |
| CTOT |
712380 |
complementary to original top strand |
| CTOB |
713725 |
complementary to original bottom strand |
| OB |
2525255 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
6483037 |
| Unique alignments |
5588889 |
| Duplicates removed |
894148 |
| Duplicated alignments were found at 536263 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
31571331 |
| Methylated C's in CpG context |
981149 |
| Methylated C's in CHG context |
137864 |
| Methylated C's in CHH context |
3219474 |
| Unmethylated C's in CpG context |
2739481 |
| Unmethylated C's in CHG context |
4925444 |
| Unmethylated C's in CHH context |
19567919 |
| Percentage methylation (CpG context) |
26.4% |
| Percentage methylation (CHG context) |
2.7% |
| Percentage methylation (CHH context) |
14.1% |
|
|
M-Bias Plot
