7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 4214077 lines in total Total number of methylation call strings processed: 4214077 Final Cytosine Methylation Report ================================= Total number of C's analysed: 23724495 Total methylated C's in CpG context: 785155 Total methylated C's in CHG context: 93231 Total methylated C's in CHH context: 2435091 Total C to T conversions in CpG context: 1991364 Total C to T conversions in CHG context: 3690612 Total C to T conversions in CHH context: 14729042 C methylated in CpG context: 28.3% C methylated in CHG context: 2.5% C methylated in CHH context: 14.2%