Alignment Stats
| Sequences analysed in total |
12231319 |
| Single-end alignments with a unique best hit |
5718874 |
| Sequences without alignments under any condition |
184967 |
| Sequences that did not map uniquely |
6327478 |
| Genomic sequence context not extractable (edges of chromosomes) |
3958 |
|
|
Cytosine Methylation
| Total C's analysed |
32455254 |
| Methylated C's in CpG context |
1107493 |
| Methylated C's in CHG context |
149103 |
| Methylated C's in CHH context |
3559852 |
| Methylated C's in Unknown context |
62167 |
| Unmethylated C's in CpG context |
2805384 |
| Unmethylated C's in CHG context |
5099491 |
| Unmethylated C's in CHH context |
19733931 |
| Unmethylated C's in Unknown context |
107662 |
| Percentage methylation (CpG context) |
28.3% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
15.3% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2232041 |
original top strand |
| CTOT |
625277 |
complementary to original top strand |
| CTOB |
627146 |
complementary to original bottom strand |
| OB |
2230452 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
5714916 |
| Unique alignments |
4934475 |
| Duplicates removed |
780441 |
| Duplicated alignments were found at 442111 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
27854315 |
| Methylated C's in CpG context |
935861 |
| Methylated C's in CHG context |
124388 |
| Methylated C's in CHH context |
2873426 |
| Unmethylated C's in CpG context |
2346339 |
| Unmethylated C's in CHG context |
4353881 |
| Unmethylated C's in CHH context |
17220420 |
| Percentage methylation (CpG context) |
28.5% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
14.3% |
|
|
M-Bias Plot
