Alignment Stats
Sequences analysed in total |
11408856 |
Single-end alignments with a unique best hit |
5364918 |
Sequences without alignments under any condition |
163003 |
Sequences that did not map uniquely |
5880935 |
Genomic sequence context not extractable (edges of chromosomes) |
3728 |
|
|
Cytosine Methylation
Total C's analysed |
30242630 |
Methylated C's in CpG context |
1073001 |
Methylated C's in CHG context |
126723 |
Methylated C's in CHH context |
3190332 |
Methylated C's in Unknown context |
55634 |
Unmethylated C's in CpG context |
2530272 |
Unmethylated C's in CHG context |
4740036 |
Unmethylated C's in CHH context |
18582266 |
Unmethylated C's in Unknown context |
99087 |
Percentage methylation (CpG context) |
29.8% |
Percentage methylation (CHG context) |
2.6% |
Percentage methylation (CHH context) |
14.7% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
2109625 |
original top strand |
CTOT |
570642 |
complementary to original top strand |
CTOB |
571132 |
complementary to original bottom strand |
OB |
2109791 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
5361190 |
Unique alignments |
4708897 |
Duplicates removed |
652293 |
Duplicated alignments were found at 404094 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
26471633 |
Methylated C's in CpG context |
929005 |
Methylated C's in CHG context |
107697 |
Methylated C's in CHH context |
2661463 |
Unmethylated C's in CpG context |
2180754 |
Unmethylated C's in CHG context |
4130778 |
Unmethylated C's in CHH context |
16461936 |
Percentage methylation (CpG context) |
29.9% |
Percentage methylation (CHG context) |
2.5% |
Percentage methylation (CHH context) |
13.9% |
|
|
M-Bias Plot