3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 4686287 lines in total Total number of methylation call strings processed: 4686287 Final Cytosine Methylation Report ================================= Total number of C's analysed: 26424291 Total methylated C's in CpG context: 908872 Total methylated C's in CHG context: 109325 Total methylated C's in CHH context: 2698694 Total C to T conversions in CpG context: 2196441 Total C to T conversions in CHG context: 4131710 Total C to T conversions in CHH context: 16379249 C methylated in CpG context: 29.3% C methylated in CHG context: 2.6% C methylated in CHH context: 14.1%