Meth7_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 355913 lines in total Total number of methylation call strings processed: 711826 Final Cytosine Methylation Report ================================= Total number of C's analysed: 9547331 Total methylated C's in CpG context: 721532 Total methylated C's in CHG context: 38288 Total methylated C's in CHH context: 125836 Total C to T conversions in CpG context: 676092 Total C to T conversions in CHG context: 1794519 Total C to T conversions in CHH context: 6191064 C methylated in CpG context: 51.6% C methylated in CHG context: 2.1% C methylated in CHH context: 2.0%