CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2247822 33008876 6.38 35256698 2 487411 72505 87.05 559916 3 69196 1953577 3.42 2022773 4 94895 3472408 2.66 3567303 5 114625 3388037 3.27 3502662 6 134333 3269879 3.95 3404212 7 132282 3160423 4.02 3292705 8 131129 3200455 3.94 3331584 9 152962 3287827 4.45 3440789 10 160811 3387712 4.53 3548523 11 123280 3294289 3.61 3417569 12 136856 3386365 3.88 3523221 13 123961 3099708 3.85 3223669 14 129608 3201600 3.89 3331208 15 141167 3305439 4.10 3446606 16 295976 4086478 6.75 4382454 17 151583 3643829 3.99 3795412 18 114035 3001805 3.66 3115840 19 109043 2887035 3.64 2996078 20 109048 2919382 3.60 3028430 21 120992 3363916 3.47 3484908 22 115772 3522840 3.18 3638612 23 115668 3404542 3.29 3520210 24 124197 2936959 4.06 3061156 25 121873 3175980 3.70 3297853 26 106830 2946496 3.50 3053326 27 106890 3107701 3.33 3214591 28 111457 3303216 3.26 3414673 29 150077 3794452 3.80 3944529 30 141121 3723878 3.65 3864999 31 167381 3881332 4.13 4048713 32 140976 3749012 3.62 3889988 33 163376 3988069 3.94 4151445 34 173048 4210220 3.95 4383268 35 108086 3275392 3.19 3383478 36 124554 3364798 3.57 3489352 37 104841 3114259 3.26 3219100 38 101095 3281117 2.99 3382212 39 114205 3347981 3.30 3462186 40 163834 3830904 4.10 3994738 41 140562 3591319 3.77 3731881 42 115176 3102439 3.58 3217615 43 106037 3034205 3.38 3140242 44 114755 2986193 3.70 3100948 45 110720 2998279 3.56 3108999 46 97892 2813724 3.36 2911616 47 102514 3017083 3.29 3119597 48 93800 2860191 3.18 2953991 49 93380 2727068 3.31 2820448 50 86399 2745751 3.05 2832150 51 142512 3589432 3.82 3731944 52 126351 3849050 3.18 3975401 53 103749 3345763 3.01 3449512 54 113395 3017368 3.62 3130763 55 82660 2553246 3.14 2635906 56 88144 2694259 3.17 2782403 57 82278 2656863 3.00 2739141 58 131551 3827387 3.32 3958938 59 114132 3665449 3.02 3779581 60 85662 2518216 3.29 2603878 61 84262 2573451 3.17 2657713 62 80454 3007190 2.61 3087644 63 82246 3094946 2.59 3177192 64 81706 2578422 3.07 2660128 65 78039 2492542 3.04 2570581 66 81151 2768012 2.85 2849163 67 75478 2687669 2.73 2763147 68 66726 2391813 2.71 2458539 69 70763 2529251 2.72 2600014 70 64303 2340901 2.67 2405204 71 62658 2246435 2.71 2309093 72 76558 2326257 3.19 2402815 73 67601 2388358 2.75 2455959 74 64590 2401793 2.62 2466383 75 61479 2265732 2.64 2327211 76 63635 2191570 2.82 2255205 77 65666 2213864 2.88 2279530 78 54914 2048151 2.61 2103065 79 53735 2075830 2.52 2129565 80 58183 2079514 2.72 2137697 81 60268 2167827 2.70 2228095 82 84907 3101542 2.66 3186449 83 73863 3229920 2.24 3303783 84 69538 2349233 2.87 2418771 85 58204 2019654 2.80 2077858 86 84427 3195588 2.57 3280015 87 101633 3505767 2.82 3607400 88 65459 2259057 2.82 2324516 89 56392 1996471 2.75 2052863 90 62462 2120491 2.86 2182953 91 55792 1996109 2.72 2051901 92 59012 2242496 2.56 2301508 93 84580 3244818 2.54 3329398 94 97341 2965309 3.18 3062650 95 70744 2057512 3.32 2128256 96 72044 1992571 3.49 2064615 97 58409 1826642 3.10 1885051 98 49847 1767401 2.74 1817248 99 61000 2020533 2.93 2081533 100 46775 1852469 2.46 1899244 101 46997 1799309 2.55 1846306 102 47678 1858795 2.50 1906473 103 47625 1725719 2.69 1773344 104 98083 2352776 4.00 2450859 105 80602 2209914 3.52 2290516 106 47431 1840414 2.51 1887845 107 54670 1797443 2.95 1852113 108 42964 1615763 2.59 1658727 109 44335 1679087 2.57 1723422 110 52406 1892833 2.69 1945239 111 82656 2246978 3.55 2329634 112 82928 2064171 3.86 2147099 113 76714 2313506 3.21 2390220 114 88631 2230875 3.82 2319506 115 72372 2309430 3.04 2381802 116 71292 2180225 3.17 2251517 117 46029 1551560 2.88 1597589 118 36688 1605592 2.23 1642280 119 37979 1544845 2.40 1582824 120 50176 1941011 2.52 1991187 121 45847 1745781 2.56 1791628 122 46452 2083166 2.18 2129618 123 60245 1933092 3.02 1993337 124 42186 1539394 2.67 1581580 125 34096 1419656 2.35 1453752 126 36296 1452875 2.44 1489171 127 36747 1421871 2.52 1458618 128 52566 2014493 2.54 2067059 129 70586 2022110 3.37 2092696 130 42350 1341765 3.06 1384115 131 30967 1243568 2.43 1274535 132 38178 1381445 2.69 1419623 133 32654 1288219 2.47 1320873 134 30368 1276731 2.32 1307099 135 34629 1356467 2.49 1391096 136 33758 1269735 2.59 1303493 137 31260 1258902 2.42 1290162 138 31396 1234246 2.48 1265642 139 43155 1439415 2.91 1482570 140 53064 1658755 3.10 1711819 141 37295 1251446 2.89 1288741 142 33069 1197731 2.69 1230800 143 32533 1281608 2.48 1314141 144 86858 2140073 3.90 2226931 145 52256 1283888 3.91 1336144 146 33618 1177961 2.77 1211579 147 28036 1099729 2.49 1127765 148 25531 400001 6.00 425532 149 128030 463184 21.66 591214 150 206590 440689 31.92 647279 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 133108 39636378 0.33 39769486 2 76721 206086 27.13 282807 3 434075 227779 65.58 661854 4 18784 3610084 0.52 3628868 5 17579 2704845 0.65 2722424 6 21348 2571285 0.82 2592633 7 22216 2812304 0.78 2834520 8 33798 2751460 1.21 2785258 9 28275 4504204 0.62 4532479 10 27279 3218406 0.84 3245685 11 21761 2654955 0.81 2676716 12 21216 3009612 0.70 3030828 13 19760 3130105 0.63 3149865 14 18493 2745757 0.67 2764250 15 21001 3046816 0.68 3067817 16 20911 3642052 0.57 3662963 17 30582 3597936 0.84 3628518 18 20473 2985270 0.68 3005743 19 21950 3330247 0.65 3352197 20 20031 2694856 0.74 2714887 21 25116 3249443 0.77 3274559 22 25676 3583915 0.71 3609591 23 23331 2894529 0.80 2917860 24 23137 2900784 0.79 2923921 25 24504 3032427 0.80 3056931 26 22548 2821022 0.79 2843570 27 22614 3092125 0.73 3114739 28 25252 3505926 0.72 3531178 29 30593 3056586 0.99 3087179 30 23053 2842082 0.80 2865135 31 34650 4433847 0.78 4468497 32 18925 2623827 0.72 2642752 33 24328 2814344 0.86 2838672 34 33334 4994723 0.66 5028057 35 18387 2708157 0.67 2726544 36 24749 3063976 0.80 3088725 37 20372 3043165 0.66 3063537 38 24489 4043201 0.60 4067690 39 20019 2999289 0.66 3019308 40 19917 2736021 0.72 2755938 41 19516 2906881 0.67 2926397 42 19052 2932262 0.65 2951314 43 19993 3048443 0.65 3068436 44 18644 2750685 0.67 2769329 45 21329 3151031 0.67 3172360 46 19207 2881667 0.66 2900874 47 19144 2749017 0.69 2768161 48 18839 2759211 0.68 2778050 49 19627 2744982 0.71 2764609 50 18540 2665033 0.69 2683573 51 22387 3446746 0.65 3469133 52 18071 2588216 0.69 2606287 53 17917 2541065 0.70 2558982 54 20275 3093657 0.65 3113932 55 18080 2672541 0.67 2690621 56 17377 2322503 0.74 2339880 57 17714 2587947 0.68 2605661 58 19003 2909201 0.65 2928204 59 17521 2754582 0.63 2772103 60 17192 2462844 0.69 2480036 61 18823 2641716 0.71 2660539 62 15933 2329031 0.68 2344964 63 17675 2682052 0.65 2699727 64 17265 2513778 0.68 2531043 65 16484 2241029 0.73 2257513 66 16512 2294312 0.71 2310824 67 15552 2241176 0.69 2256728 68 16813 2462845 0.68 2479658 69 16168 2277342 0.70 2293510 70 15961 2337714 0.68 2353675 71 15036 2172026 0.69 2187062 72 16693 2316597 0.72 2333290 73 15208 2221624 0.68 2236832 74 15123 2339223 0.64 2354346 75 16415 2323768 0.70 2340183 76 15036 2066567 0.72 2081603 77 14205 2029500 0.70 2043705 78 15472 2376412 0.65 2391884 79 15736 2369278 0.66 2385014 80 13805 1906857 0.72 1920662 81 15370 2165373 0.70 2180743 82 14558 2090221 0.69 2104779 83 14462 2119713 0.68 2134175 84 15912 2155739 0.73 2171651 85 14679 2108256 0.69 2122935 86 16970 2573241 0.66 2590211 87 15710 2090740 0.75 2106450 88 16290 2157447 0.75 2173737 89 14176 1906496 0.74 1920672 90 14474 1955764 0.73 1970238 91 12865 1872928 0.68 1885793 92 13146 1827716 0.71 1840862 93 16199 2035542 0.79 2051741 94 15469 2559298 0.60 2574767 95 14832 2002598 0.74 2017430 96 15808 2102101 0.75 2117909 97 13205 1934678 0.68 1947883 98 13049 1882144 0.69 1895193 99 13846 1957028 0.70 1970874 100 13169 1830549 0.71 1843718 101 11866 1702111 0.69 1713977 102 12981 1841598 0.70 1854579 103 14158 2002860 0.70 2017018 104 13273 1805216 0.73 1818489 105 14400 1988644 0.72 2003044 106 12761 1758755 0.72 1771516 107 18493 2840967 0.65 2859460 108 12236 1723191 0.71 1735427 109 13642 1774072 0.76 1787714 110 12404 1685237 0.73 1697641 111 21594 3422673 0.63 3444267 112 11367 1653134 0.68 1664501 113 11560 1512046 0.76 1523606 114 19088 2679136 0.71 2698224 115 11799 1542765 0.76 1554564 116 12599 1932991 0.65 1945590 117 11471 1545918 0.74 1557389 118 10382 1470770 0.70 1481152 119 11245 1560806 0.72 1572051 120 15628 1780102 0.87 1795730 121 10753 1513405 0.71 1524158 122 10827 1567359 0.69 1578186 123 15358 2230344 0.68 2245702 124 11001 1514332 0.72 1525333 125 10165 1426910 0.71 1437075 126 10581 1370688 0.77 1381269 127 10396 1393674 0.74 1404070 128 20590 1948493 1.05 1969083 129 12412 1884381 0.65 1896793 130 9571 1231372 0.77 1240943 131 9278 1233202 0.75 1242480 132 9922 1306927 0.75 1316849 133 9526 1248970 0.76 1258496 134 8485 1164168 0.72 1172653 135 9494 1275059 0.74 1284553 136 15587 2509575 0.62 2525162 137 9603 1320450 0.72 1330053 138 10378 1230159 0.84 1240537 139 8904 1212469 0.73 1221373 140 8474 1169086 0.72 1177560 141 8437 1165593 0.72 1174030 142 8543 1124503 0.75 1133046 143 9064 1144965 0.79 1154029 144 28080 2366612 1.17 2394692 145 9687 1199956 0.80 1209643 146 8986 1159222 0.77 1168208 147 8037 1036098 0.77 1044135 148 5790 387717 1.47 393507 149 8600 451939 1.87 460539 150 10928 578471 1.85 589399 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 83950 2574130 3.16 2658080 2 454204 7987973 5.38 8442177 3 433423 7344482 5.57 7777905 4 228849 10983815 2.04 11212664 5 234821 10051330 2.28 10286151 6 215535 11203089 1.89 11418624 7 206117 10506752 1.92 10712869 8 234211 10491250 2.18 10725461 9 222447 10178119 2.14 10400566 10 195121 10374114 1.85 10569235 11 210251 10517288 1.96 10727539 12 229651 11504751 1.96 11734402 13 263687 11145685 2.31 11409372 14 256510 10209862 2.45 10466372 15 192178 11689411 1.62 11881589 16 201033 10702826 1.84 10903859 17 207239 11133261 1.83 11340500 18 196481 11542265 1.67 11738746 19 218100 10673844 2.00 10891944 20 200605 10540058 1.87 10740663 21 216963 11018425 1.93 11235388 22 265996 11245786 2.31 11511782 23 250044 10736043 2.28 10986087 24 195717 10775399 1.78 10971116 25 231005 10326814 2.19 10557819 26 210159 10307238 2.00 10517397 27 200118 11438172 1.72 11638290 28 192359 10522188 1.80 10714547 29 166203 9822612 1.66 9988815 30 144207 10552576 1.35 10696783 31 131213 10034435 1.29 10165648 32 113908 9688036 1.16 9801944 33 99234 9968699 0.99 10067933 34 96404 9778242 0.98 9874646 35 93723 10060668 0.92 10154391 36 73834 9823499 0.75 9897333 37 76810 10618067 0.72 10694877 38 73961 10153411 0.72 10227372 39 70261 9434158 0.74 9504419 40 71446 9689522 0.73 9760968 41 66601 9232853 0.72 9299454 42 65968 9366793 0.70 9432761 43 67014 10020090 0.66 10087104 44 67117 9885013 0.67 9952130 45 63131 9561688 0.66 9624819 46 62059 9078027 0.68 9140086 47 62099 8990484 0.69 9052583 48 60861 9996787 0.61 10057648 49 58477 9781940 0.59 9840417 50 61643 8992823 0.68 9054466 51 64240 9451767 0.68 9516007 52 53416 8368805 0.63 8422221 53 54767 8507250 0.64 8562017 54 60679 9367336 0.64 9428015 55 55687 8961925 0.62 9017612 56 54073 8340880 0.64 8394953 57 55377 8621559 0.64 8676936 58 56675 8730752 0.64 8787427 59 53392 8037134 0.66 8090526 60 52753 8338928 0.63 8391681 61 50488 7978800 0.63 8029288 62 54296 8371024 0.64 8425320 63 57473 8898052 0.64 8955525 64 52729 7859336 0.67 7912065 65 52891 8142260 0.65 8195151 66 51675 7847027 0.65 7898702 67 52367 8533266 0.61 8585633 68 50272 8256926 0.61 8307198 69 49598 7957815 0.62 8007413 70 54983 9033549 0.60 9088532 71 50353 7348914 0.68 7399267 72 52658 8345757 0.63 8398415 73 51048 7942699 0.64 7993747 74 47798 7293322 0.65 7341120 75 52826 8471908 0.62 8524734 76 48610 7920716 0.61 7969326 77 50187 8084920 0.62 8135107 78 50334 7829407 0.64 7879741 79 48354 7194170 0.67 7242524 80 47866 7997683 0.59 8045549 81 43414 6967971 0.62 7011385 82 50189 7454716 0.67 7504905 83 44682 6913622 0.64 6958304 84 42325 6793422 0.62 6835747 85 43178 6963901 0.62 7007079 86 44419 6675388 0.66 6719807 87 46983 6466799 0.72 6513782 88 39793 6467202 0.61 6506995 89 42225 6536374 0.64 6578599 90 42535 6984089 0.61 7026624 91 42241 6865498 0.61 6907739 92 40857 6352036 0.64 6392893 93 41398 6334254 0.65 6375652 94 40084 6208125 0.64 6248209 95 39055 6221508 0.62 6260563 96 42251 6877824 0.61 6920075 97 41182 6735555 0.61 6776737 98 38083 5831912 0.65 5869995 99 40210 6351882 0.63 6392092 100 37632 5968257 0.63 6005889 101 40502 6348710 0.63 6389212 102 40749 6427839 0.63 6468588 103 37123 5642132 0.65 5679255 104 38901 5565852 0.69 5604753 105 48093 6559968 0.73 6608061 106 36674 5674090 0.64 5710764 107 39428 6166554 0.64 6205982 108 41299 6683640 0.61 6724939 109 35742 5596337 0.63 5632079 110 38584 5865456 0.65 5904040 111 34030 5443691 0.62 5477721 112 33469 5325591 0.62 5359060 113 32574 5072710 0.64 5105284 114 33931 5182326 0.65 5216257 115 37689 6046801 0.62 6084490 116 37415 5445663 0.68 5483078 117 34099 5651241 0.60 5685340 118 37617 6322858 0.59 6360475 119 33605 5043175 0.66 5076780 120 31842 4679669 0.68 4711511 121 32837 5027833 0.65 5060670 122 33563 5296124 0.63 5329687 123 33295 5425963 0.61 5459258 124 32243 5252004 0.61 5284247 125 29504 4372246 0.67 4401750 126 28955 4386464 0.66 4415419 127 32656 5050379 0.64 5083035 128 32343 4984056 0.64 5016399 129 31250 4789720 0.65 4820970 130 32484 5674365 0.57 5706849 131 28658 4453535 0.64 4482193 132 31009 4782611 0.64 4813620 133 31739 4942404 0.64 4974143 134 28732 4180506 0.68 4209238 135 27723 4026479 0.68 4054202 136 25740 3958240 0.65 3983980 137 30639 4612403 0.66 4643042 138 26690 4079617 0.65 4106307 139 32212 4824522 0.66 4856734 140 27822 3886849 0.71 3914671 141 28205 3955193 0.71 3983398 142 27916 3890782 0.71 3918698 143 30699 4347948 0.70 4378647 144 37805 4134855 0.91 4172660 145 26305 3729964 0.70 3756269 146 27982 3642116 0.76 3670098 147 24781 3593440 0.68 3618221 148 15590 1161246 1.32 1176836 149 12616 1172294 1.06 1184910 150 18980 1707464 1.10 1726444 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 780992 14004707 5.28 14785699 2 492311 41452 92.23 533763 3 15360 600419 2.49 615779 4 19620 1120251 1.72 1139871 5 21476 881121 2.38 902597 6 22639 852878 2.59 875517 7 22597 901022 2.45 923619 8 25469 924946 2.68 950415 9 38019 934373 3.91 972392 10 39799 955557 4.00 995356 11 22243 975229 2.23 997472 12 22513 983223 2.24 1005736 13 20911 965845 2.12 986756 14 21402 954198 2.19 975600 15 42849 1007328 4.08 1050177 16 117519 979213 10.72 1096732 17 28447 936556 2.95 965003 18 20414 883995 2.26 904409 19 22105 883177 2.44 905282 20 23548 886563 2.59 910111 21 21692 912518 2.32 934210 22 20083 884543 2.22 904626 23 20107 837066 2.35 857173 24 17687 769395 2.25 787082 25 17642 830425 2.08 848067 26 17505 797704 2.15 815209 27 16565 775660 2.09 792225 28 15791 760314 2.03 776105 29 16876 779869 2.12 796745 30 19104 834416 2.24 853520 31 20202 884891 2.23 905093 32 17542 771235 2.22 788777 33 17529 788015 2.18 805544 34 18196 807251 2.20 825447 35 14271 678500 2.06 692771 36 14408 673608 2.09 688016 37 16041 746171 2.10 762212 38 15233 735870 2.03 751103 39 14521 691565 2.06 706086 40 16964 743874 2.23 760838 41 16070 702744 2.24 718814 42 14050 676859 2.03 690909 43 14991 700431 2.10 715422 44 14530 651463 2.18 665993 45 13378 578877 2.26 592255 46 13058 601584 2.12 614642 47 12585 632518 1.95 645103 48 13462 640933 2.06 654395 49 12517 613153 2.00 625670 50 12524 595686 2.06 608210 51 14109 650769 2.12 664878 52 13876 673076 2.02 686952 53 12002 574302 2.05 586304 54 11282 577259 1.92 588541 55 11717 576358 1.99 588075 56 11437 555587 2.02 567024 57 11354 546637 2.03 557991 58 12864 609279 2.07 622143 59 13194 592172 2.18 605366 60 9939 512784 1.90 522723 61 10083 531991 1.86 542074 62 9963 554907 1.76 564870 63 10519 531498 1.94 542017 64 10003 518101 1.89 528104 65 9782 490443 1.96 500225 66 9265 485313 1.87 494578 67 9545 529131 1.77 538676 68 9400 488665 1.89 498065 69 9486 461120 2.02 470606 70 9592 477586 1.97 487178 71 10083 479363 2.06 489446 72 9789 480695 2.00 490484 73 9976 492886 1.98 502862 74 9846 466417 2.07 476263 75 8759 467078 1.84 475837 76 8594 435779 1.93 444373 77 8541 422201 1.98 430742 78 7432 402408 1.81 409840 79 7430 381686 1.91 389116 80 7173 382990 1.84 390163 81 7614 405314 1.84 412928 82 8284 475561 1.71 483845 83 7486 473888 1.56 481374 84 7582 416499 1.79 424081 85 8687 406224 2.09 414911 86 10617 458049 2.27 468666 87 9243 474220 1.91 483463 88 10006 396713 2.46 406719 89 7044 378811 1.83 385855 90 7277 379238 1.88 386515 91 7136 345743 2.02 352879 92 6124 349025 1.72 355149 93 8605 450752 1.87 459357 94 9248 423590 2.14 432838 95 6740 351433 1.88 358173 96 6228 324949 1.88 331177 97 5992 321124 1.83 327116 98 5938 318050 1.83 323988 99 6070 362337 1.65 368407 100 5849 341358 1.68 347207 101 5790 304128 1.87 309918 102 5379 322784 1.64 328163 103 5881 340829 1.70 346710 104 7600 344318 2.16 351918 105 6456 315333 2.01 321789 106 5206 305847 1.67 311053 107 5293 285947 1.82 291240 108 5182 297165 1.71 302347 109 5469 319315 1.68 324784 110 5377 292180 1.81 297557 111 7200 325740 2.16 332940 112 8037 333268 2.35 341305 113 6666 319320 2.04 325986 114 6976 335634 2.04 342610 115 5072 294263 1.69 299335 116 6541 285087 2.24 291628 117 4495 250946 1.76 255441 118 4417 285146 1.53 289563 119 4261 247592 1.69 251853 120 5071 261854 1.90 266925 121 10235 256293 3.84 266528 122 4848 267222 1.78 272070 123 4227 249506 1.67 253733 124 4572 260793 1.72 265365 125 4681 233092 1.97 237773 126 3912 227803 1.69 231715 127 4128 237576 1.71 241704 128 5340 264283 1.98 269623 129 5310 261050 1.99 266360 130 4088 219879 1.83 223967 131 3906 207854 1.84 211760 132 3645 204922 1.75 208567 133 3715 211630 1.73 215345 134 3617 212391 1.67 216008 135 3563 212699 1.65 216262 136 3739 227252 1.62 230991 137 3804 228033 1.64 231837 138 3714 216360 1.69 220074 139 3986 219362 1.78 223348 140 5221 239380 2.13 244601 141 3479 211653 1.62 215132 142 3394 206332 1.62 209726 143 3215 210926 1.50 214141 144 8302 275915 2.92 284217 145 31860 189326 14.40 221186 146 3263 181660 1.76 184923 147 3040 169780 1.76 172820 148 2729 105060 2.53 107789 149 1574 95614 1.62 97188 150 1381 91163 1.49 92544 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 70413 12416061 0.56 12486474 2 36194 91973 28.24 128167 3 163012 80090 67.05 243102 4 6450 1183931 0.54 1190381 5 6186 841146 0.73 847332 6 8549 1045263 0.81 1053812 7 8560 867328 0.98 875888 8 17379 835475 2.04 852854 9 8166 1027278 0.79 1035444 10 8198 943887 0.86 952085 11 6509 849771 0.76 856280 12 5754 857518 0.67 863272 13 6580 1001218 0.65 1007798 14 5864 984742 0.59 990606 15 5982 831413 0.71 837395 16 6347 964740 0.65 971087 17 5929 865450 0.68 871379 18 6024 892693 0.67 898717 19 5757 935952 0.61 941709 20 5778 841830 0.68 847608 21 5783 842071 0.68 847854 22 5644 892035 0.63 897679 23 5119 743466 0.68 748585 24 5243 759177 0.69 764420 25 4716 749133 0.63 753849 26 5173 813000 0.63 818173 27 4970 790065 0.63 795035 28 4924 716873 0.68 721797 29 4901 726164 0.67 731065 30 4951 761862 0.65 766813 31 4628 745400 0.62 750028 32 4597 669158 0.68 673755 33 4515 692973 0.65 697488 34 5071 837467 0.60 842538 35 4409 691486 0.63 695895 36 4929 738356 0.66 743285 37 4615 738965 0.62 743580 38 4772 775866 0.61 780638 39 4447 671002 0.66 675449 40 4656 691685 0.67 696341 41 4073 643603 0.63 647676 42 4393 606932 0.72 611325 43 4194 685648 0.61 689842 44 4131 673376 0.61 677507 45 4150 647147 0.64 651297 46 4160 707587 0.58 711747 47 3976 604209 0.65 608185 48 3727 588163 0.63 591890 49 3758 570869 0.65 574627 50 3864 617037 0.62 620901 51 3788 627571 0.60 631359 52 3814 592128 0.64 595942 53 3726 581156 0.64 584882 54 3644 572832 0.63 576476 55 3716 577133 0.64 580849 56 3438 547903 0.62 551341 57 3479 561138 0.62 564617 58 3727 587795 0.63 591522 59 3410 514578 0.66 517988 60 3415 500506 0.68 503921 61 3012 477564 0.63 480576 62 3097 499552 0.62 502649 63 3136 517403 0.60 520539 64 3258 523740 0.62 526998 65 3120 503847 0.62 506967 66 2933 482116 0.60 485049 67 3059 501113 0.61 504172 68 3060 501253 0.61 504313 69 3001 450878 0.66 453879 70 2770 439451 0.63 442221 71 2678 443922 0.60 446600 72 2704 459290 0.59 461994 73 2612 410406 0.63 413018 74 2561 428831 0.59 431392 75 3114 438757 0.70 441871 76 2648 440439 0.60 443087 77 2627 415213 0.63 417840 78 2681 431074 0.62 433755 79 2492 411500 0.60 413992 80 2313 380575 0.60 382888 81 2662 477226 0.55 479888 82 2508 427229 0.58 429737 83 2572 406163 0.63 408735 84 3221 410208 0.78 413429 85 2330 389831 0.59 392161 86 2412 386334 0.62 388746 87 2358 386642 0.61 389000 88 2114 374552 0.56 376666 89 2199 348956 0.63 351155 90 2306 356162 0.64 358468 91 2255 411481 0.55 413736 92 1993 327282 0.61 329275 93 2286 356793 0.64 359079 94 2048 393558 0.52 395606 95 1915 314445 0.61 316360 96 2127 354537 0.60 356664 97 2116 369184 0.57 371300 98 1936 312586 0.62 314522 99 2095 332675 0.63 334770 100 1944 321253 0.60 323197 101 1819 302230 0.60 304049 102 2020 315357 0.64 317377 103 2018 341052 0.59 343070 104 1919 329154 0.58 331073 105 1777 296714 0.60 298491 106 2023 318504 0.63 320527 107 1989 348743 0.57 350732 108 1578 255954 0.61 257532 109 1738 306573 0.56 308311 110 1530 273519 0.56 275049 111 2497 434645 0.57 437142 112 1635 272302 0.60 273937 113 1574 248651 0.63 250225 114 2264 358048 0.63 360312 115 1499 267599 0.56 269098 116 1497 253806 0.59 255303 117 1549 246451 0.62 248000 118 1450 242589 0.59 244039 119 1561 261901 0.59 263462 120 1846 267793 0.68 269639 121 1841 263063 0.69 264904 122 1335 228302 0.58 229637 123 1653 287085 0.57 288738 124 1445 246056 0.58 247501 125 1208 201687 0.60 202895 126 1320 221845 0.59 223165 127 1354 229979 0.59 231333 128 2348 226900 1.02 229248 129 1291 220737 0.58 222028 130 1165 208182 0.56 209347 131 1353 245077 0.55 246430 132 1192 205535 0.58 206727 133 1190 208621 0.57 209811 134 1145 203553 0.56 204698 135 1357 241379 0.56 242736 136 1565 280939 0.55 282504 137 1227 188260 0.65 189487 138 1199 209007 0.57 210206 139 1021 181931 0.56 182952 140 1135 203349 0.56 204484 141 1130 187250 0.60 188380 142 1061 185069 0.57 186130 143 1445 213493 0.67 214938 144 1278 269718 0.47 270996 145 1249 174788 0.71 176037 146 954 177760 0.53 178714 147 879 162854 0.54 163733 148 860 94485 0.90 95345 149 642 93458 0.68 94100 150 571 86186 0.66 86757 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 57138 944945 5.70 1002083 2 73052 2236626 3.16 2309678 3 43779 2159606 1.99 2203385 4 34089 3800945 0.89 3835034 5 43645 3313597 1.30 3357242 6 26417 3463549 0.76 3489966 7 24675 3434587 0.71 3459262 8 27983 3369088 0.82 3397071 9 28018 3307467 0.84 3335485 10 25156 3232450 0.77 3257606 11 22636 3346200 0.67 3368836 12 31802 3320544 0.95 3352346 13 41589 3401546 1.21 3443135 14 23115 3026424 0.76 3049539 15 22058 3227205 0.68 3249263 16 21507 3173798 0.67 3195305 17 21488 3191811 0.67 3213299 18 21147 3171079 0.66 3192226 19 21058 3063119 0.68 3084177 20 19975 2909093 0.68 2929068 21 19840 2926960 0.67 2946800 22 19691 3066277 0.64 3085968 23 19035 2799688 0.68 2818723 24 19541 2909514 0.67 2929055 25 18926 2991572 0.63 3010498 26 18081 2696655 0.67 2714736 27 18393 2831308 0.65 2849701 28 18027 2819920 0.64 2837947 29 17579 2674487 0.65 2692066 30 17863 2773959 0.64 2791822 31 17303 2594439 0.66 2611742 32 16934 2483613 0.68 2500547 33 17228 2644577 0.65 2661805 34 17820 2707283 0.65 2725103 35 16836 2577121 0.65 2593957 36 16831 2535893 0.66 2552724 37 16104 2456883 0.65 2472987 38 16248 2433565 0.66 2449813 39 16040 2416997 0.66 2433037 40 16292 2390641 0.68 2406933 41 15164 2375679 0.63 2390843 42 15156 2305405 0.65 2320561 43 15319 2385141 0.64 2400460 44 14131 2244626 0.63 2258757 45 15281 2354472 0.64 2369753 46 14185 2187470 0.64 2201655 47 14295 2185143 0.65 2199438 48 14422 2272704 0.63 2287126 49 14227 2303101 0.61 2317328 50 13666 2136057 0.64 2149723 51 13581 2095254 0.64 2108835 52 13191 2081515 0.63 2094706 53 12926 2024078 0.63 2037004 54 13115 2056304 0.63 2069419 55 12715 2079921 0.61 2092636 56 12785 1953913 0.65 1966698 57 12644 1973364 0.64 1986008 58 12599 1956480 0.64 1969079 59 11887 1823369 0.65 1835256 60 12249 1938307 0.63 1950556 61 11718 1956005 0.60 1967723 62 11732 1897948 0.61 1909680 63 12100 1939981 0.62 1952081 64 10841 1783634 0.60 1794475 65 11350 1775210 0.64 1786560 66 11013 1793186 0.61 1804199 67 11136 1832571 0.60 1843707 68 10651 1736516 0.61 1747167 69 10983 1735340 0.63 1746323 70 11061 1826731 0.60 1837792 71 10379 1694412 0.61 1704791 72 10378 1740749 0.59 1751127 73 10170 1676463 0.60 1686633 74 10202 1606340 0.63 1616542 75 10125 1709798 0.59 1719923 76 10258 1708358 0.60 1718616 77 9828 1636001 0.60 1645829 78 9646 1583671 0.61 1593317 79 9593 1509549 0.63 1519142 80 9376 1537264 0.61 1546640 81 8976 1444497 0.62 1453473 82 9113 1487122 0.61 1496235 83 8772 1438018 0.61 1446790 84 8616 1414198 0.61 1422814 85 8712 1435103 0.60 1443815 86 8409 1369922 0.61 1378331 87 9262 1404760 0.66 1414022 88 8348 1400666 0.59 1409014 89 8136 1360003 0.59 1368139 90 8114 1331116 0.61 1339230 91 8294 1337852 0.62 1346146 92 8316 1313955 0.63 1322271 93 7772 1303081 0.59 1310853 94 7894 1278754 0.61 1286648 95 7735 1287320 0.60 1295055 96 7596 1318444 0.57 1326040 97 7682 1246175 0.61 1253857 98 7419 1208159 0.61 1215578 99 7370 1243859 0.59 1251229 100 7027 1226348 0.57 1233375 101 7443 1226962 0.60 1234405 102 7114 1194626 0.59 1201740 103 6780 1160635 0.58 1167415 104 6998 1153347 0.60 1160345 105 8555 1232122 0.69 1240677 106 6817 1099488 0.62 1106305 107 6889 1166623 0.59 1173512 108 6877 1173177 0.58 1180054 109 6656 1072049 0.62 1078705 110 6307 1075749 0.58 1082056 111 6013 1026341 0.58 1032354 112 6034 1051656 0.57 1057690 113 6100 994537 0.61 1000637 114 6308 997627 0.63 1003935 115 6399 1080079 0.59 1086478 116 5747 970599 0.59 976346 117 5717 957767 0.59 963484 118 5808 1003600 0.58 1009408 119 5801 935738 0.62 941539 120 5601 905948 0.61 911549 121 5484 926276 0.59 931760 122 5666 944188 0.60 949854 123 5463 917044 0.59 922507 124 5264 917550 0.57 922814 125 4901 833451 0.58 838352 126 5070 859040 0.59 864110 127 5637 887800 0.63 893437 128 5131 874998 0.58 880129 129 5133 875616 0.58 880749 130 5225 933508 0.56 938733 131 4649 783684 0.59 788333 132 4908 844627 0.58 849535 133 4997 841207 0.59 846204 134 4661 770050 0.60 774711 135 4601 767732 0.60 772333 136 4263 723508 0.59 727771 137 4933 818938 0.60 823871 138 4395 739575 0.59 743970 139 4741 760294 0.62 765035 140 4471 703546 0.63 708017 141 4271 696176 0.61 700447 142 4017 679732 0.59 683749 143 4391 741975 0.59 746366 144 3943 688326 0.57 692269 145 4435 695676 0.63 700111 146 4008 689249 0.58 693257 147 3624 652147 0.55 655771 148 3345 360298 0.92 363643 149 2625 343622 0.76 346247 150 2285 326328 0.70 328613