CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2010335 35485784 5.36 37496119 2 536155 88213 85.87 624368 3 59407 2029559 2.84 2088966 4 78981 3659846 2.11 3738827 5 100433 3514751 2.78 3615184 6 115770 3445314 3.25 3561084 7 111382 3323226 3.24 3434608 8 113920 3384164 3.26 3498084 9 132624 3483923 3.67 3616547 10 143433 3597306 3.83 3740739 11 104124 3490280 2.90 3594404 12 114989 3600030 3.10 3715019 13 103915 3305838 3.05 3409753 14 110827 3402639 3.15 3513466 15 125219 3515292 3.44 3640511 16 294702 4356104 6.34 4650806 17 138767 3828545 3.50 3967312 18 94794 3220874 2.86 3315668 19 89218 3080807 2.81 3170025 20 90744 3101229 2.84 3191973 21 99095 3559342 2.71 3658437 22 97872 3778839 2.52 3876711 23 98472 3600998 2.66 3699470 24 104588 3111859 3.25 3216447 25 103047 3367095 2.97 3470142 26 86742 3098413 2.72 3185155 27 86016 3302345 2.54 3388361 28 91784 3502183 2.55 3593967 29 136680 4009985 3.30 4146665 30 123069 3895766 3.06 4018835 31 155578 4105783 3.65 4261361 32 126654 3974244 3.09 4100898 33 148890 4262115 3.38 4411005 34 158773 4505106 3.40 4663879 35 91635 3509952 2.54 3601587 36 107228 3588406 2.90 3695634 37 89888 3316508 2.64 3406396 38 86779 3501986 2.42 3588765 39 96909 3584956 2.63 3681865 40 150322 4044615 3.58 4194937 41 127120 3819721 3.22 3946841 42 100105 3311552 2.93 3411657 43 89548 3244223 2.69 3333771 44 97728 3162892 3.00 3260620 45 93777 3181733 2.86 3275510 46 82934 2987754 2.70 3070688 47 88963 3214613 2.69 3303576 48 82985 3060871 2.64 3143856 49 81421 2909134 2.72 2990555 50 74372 2922820 2.48 2997192 51 128973 3814211 3.27 3943184 52 111557 4097455 2.65 4209012 53 90473 3562997 2.48 3653470 54 97771 3195909 2.97 3293680 55 71877 2737110 2.56 2808987 56 76868 2868420 2.61 2945288 57 71995 2847003 2.47 2918998 58 118658 4022446 2.87 4141104 59 101312 3888238 2.54 3989550 60 76703 2709164 2.75 2785867 61 74746 2765740 2.63 2840486 62 71141 3207205 2.17 3278346 63 73621 3316141 2.17 3389762 64 74018 2756018 2.62 2830036 65 68074 2662368 2.49 2730442 66 73400 2972756 2.41 3046156 67 66842 2912846 2.24 2979688 68 59839 2592692 2.26 2652531 69 63257 2736737 2.26 2799994 70 57984 2517547 2.25 2575531 71 55992 2393098 2.29 2449090 72 69511 2498375 2.71 2567886 73 60243 2559033 2.30 2619276 74 57792 2585293 2.19 2643085 75 56514 2434621 2.27 2491135 76 57410 2361360 2.37 2418770 77 59807 2380382 2.45 2440189 78 49349 2214917 2.18 2264266 79 48696 2247114 2.12 2295810 80 52888 2248671 2.30 2301559 81 55242 2327628 2.32 2382870 82 79777 3319742 2.35 3399519 83 69826 3446854 1.99 3516680 84 65597 2537715 2.52 2603312 85 53595 2166296 2.41 2219891 86 75654 3381070 2.19 3456724 87 97012 3743282 2.53 3840294 88 62009 2436190 2.48 2498199 89 52161 2137129 2.38 2189290 90 57943 2268805 2.49 2326748 91 51720 2148064 2.35 2199784 92 56877 2401131 2.31 2458008 93 80144 3509749 2.23 3589893 94 99496 3196365 3.02 3295861 95 70563 2188756 3.12 2259319 96 71702 2146099 3.23 2217801 97 56812 1947001 2.84 2003813 98 46536 1881185 2.41 1927721 99 60180 2161024 2.71 2221204 100 44100 1970636 2.19 2014736 101 43297 1913494 2.21 1956791 102 45590 1988957 2.24 2034547 103 44534 1833239 2.37 1877773 104 93748 2496416 3.62 2590164 105 82673 2335387 3.42 2418060 106 44437 1965158 2.21 2009595 107 53370 1933171 2.69 1986541 108 39623 1714095 2.26 1753718 109 41723 1778397 2.29 1820120 110 50542 2010319 2.45 2060861 111 82141 2373122 3.35 2455263 112 83793 2210237 3.65 2294030 113 78762 2446816 3.12 2525578 114 92226 2332895 3.80 2425121 115 74280 2446985 2.95 2521265 116 74907 2303427 3.15 2378334 117 45441 1650521 2.68 1695962 118 33874 1704779 1.95 1738653 119 35911 1612869 2.18 1648780 120 50251 2072765 2.37 2123016 121 44418 1829088 2.37 1873506 122 44744 2180747 2.01 2225491 123 59161 2063825 2.79 2122986 124 40338 1620662 2.43 1661000 125 32272 1476303 2.14 1508575 126 34094 1516125 2.20 1550219 127 34364 1483435 2.26 1517799 128 51530 2093027 2.40 2144557 129 71052 2123031 3.24 2194083 130 40590 1395329 2.83 1435919 131 28789 1294758 2.18 1323547 132 36293 1439302 2.46 1475595 133 30859 1335088 2.26 1365947 134 27996 1320131 2.08 1348127 135 31589 1405566 2.20 1437155 136 32063 1297258 2.41 1329321 137 29668 1280348 2.26 1310016 138 29909 1265464 2.31 1295373 139 40880 1490662 2.67 1531542 140 51583 1696306 2.95 1747889 141 35568 1290494 2.68 1326062 142 31655 1209290 2.55 1240945 143 31164 1301961 2.34 1333125 144 93838 2257215 3.99 2351053 145 51256 1331766 3.71 1383022 146 31520 1200393 2.56 1231913 147 25698 1122656 2.24 1148354 148 23699 406715 5.51 430414 149 141858 464873 23.38 606731 150 225567 439405 33.92 664972 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 137803 40975660 0.34 41113463 2 87685 241688 26.62 329373 3 481412 263215 64.65 744627 4 21041 3806199 0.55 3827240 5 20366 2888914 0.70 2909280 6 24527 2680000 0.91 2704527 7 25381 2941282 0.86 2966663 8 38025 2903977 1.29 2942002 9 32198 4716246 0.68 4748444 10 29364 3357842 0.87 3387206 11 24997 2784388 0.89 2809385 12 23968 3169841 0.75 3193809 13 22395 3308260 0.67 3330655 14 20827 2882533 0.72 2903360 15 23427 3178590 0.73 3202017 16 23725 3902587 0.60 3926312 17 34856 3817666 0.90 3852522 18 24048 3145496 0.76 3169544 19 25409 3526524 0.72 3551933 20 23388 2798047 0.83 2821435 21 28007 3439589 0.81 3467596 22 28424 3783880 0.75 3812304 23 26528 3050371 0.86 3076899 24 26047 3036678 0.85 3062725 25 27634 3192345 0.86 3219979 26 25054 2987083 0.83 3012137 27 25663 3243836 0.78 3269499 28 28125 3701991 0.75 3730116 29 31050 3229076 0.95 3260126 30 26987 2997326 0.89 3024313 31 37479 4716144 0.79 4753623 32 22143 2793924 0.79 2816067 33 27975 2977237 0.93 3005212 34 36391 5276951 0.68 5313342 35 21879 2888263 0.75 2910142 36 29009 3235209 0.89 3264218 37 23709 3221133 0.73 3244842 38 28122 4250184 0.66 4278306 39 23188 3176166 0.72 3199354 40 23551 2915941 0.80 2939492 41 22867 3070123 0.74 3092990 42 22556 3085012 0.73 3107568 43 23359 3266829 0.71 3290188 44 22257 2914983 0.76 2937240 45 24969 3355869 0.74 3380838 46 21907 3054721 0.71 3076628 47 22817 2910204 0.78 2933021 48 22308 2957604 0.75 2979912 49 23703 2935356 0.80 2959059 50 22119 2852404 0.77 2874523 51 25806 3638544 0.70 3664350 52 21818 2767362 0.78 2789180 53 20905 2703323 0.77 2724228 54 24652 3338711 0.73 3363363 55 22336 2885465 0.77 2907801 56 20555 2458639 0.83 2479194 57 21614 2774580 0.77 2796194 58 22676 3136050 0.72 3158726 59 21418 2946064 0.72 2967482 60 21470 2645113 0.81 2666583 61 22714 2872644 0.78 2895358 62 19464 2491775 0.78 2511239 63 21910 2911371 0.75 2933281 64 21135 2697512 0.78 2718647 65 19500 2388280 0.81 2407780 66 19928 2439637 0.81 2459565 67 18932 2407267 0.78 2426199 68 20615 2663817 0.77 2684432 69 19774 2450290 0.80 2470064 70 19760 2489931 0.79 2509691 71 18730 2338228 0.79 2356958 72 20403 2494513 0.81 2514916 73 18944 2392027 0.79 2410971 74 19027 2505256 0.75 2524283 75 19707 2506761 0.78 2526468 76 18331 2205824 0.82 2224155 77 17153 2162153 0.79 2179306 78 19507 2547435 0.76 2566942 79 19752 2537922 0.77 2557674 80 17060 2057635 0.82 2074695 81 19495 2308828 0.84 2328323 82 18122 2227828 0.81 2245950 83 18150 2267821 0.79 2285971 84 19244 2316493 0.82 2335737 85 18007 2249523 0.79 2267530 86 20310 2659844 0.76 2680154 87 19416 2258162 0.85 2277578 88 20207 2304693 0.87 2324900 89 17143 2054101 0.83 2071244 90 17679 2083715 0.84 2101394 91 16136 1998790 0.80 2014926 92 16442 1966262 0.83 1982704 93 20697 2192203 0.94 2212900 94 18855 2734465 0.68 2753320 95 17476 2116694 0.82 2134170 96 19527 2243917 0.86 2263444 97 16201 2061710 0.78 2077911 98 16338 2019297 0.80 2035635 99 17327 2083835 0.82 2101162 100 16211 1950231 0.82 1966442 101 14818 1806452 0.81 1821270 102 16061 1952760 0.82 1968821 103 17350 2134059 0.81 2151409 104 16181 1913564 0.84 1929745 105 17136 2108366 0.81 2125502 106 15462 1855081 0.83 1870543 107 22985 2992033 0.76 3015018 108 15802 1857034 0.84 1872836 109 16959 1876464 0.90 1893423 110 15596 1787272 0.87 1802868 111 26122 3586733 0.72 3612855 112 14232 1769329 0.80 1783561 113 14107 1591520 0.88 1605627 114 23619 2796484 0.84 2820103 115 14675 1632001 0.89 1646676 116 15545 2072899 0.74 2088444 117 14441 1647323 0.87 1661764 118 13202 1539630 0.85 1552832 119 14187 1628943 0.86 1643130 120 20589 1890942 1.08 1911531 121 13466 1575280 0.85 1588746 122 13372 1632647 0.81 1646019 123 18333 2303407 0.79 2321740 124 13651 1584912 0.85 1598563 125 12471 1496413 0.83 1508884 126 13177 1414569 0.92 1427746 127 12884 1452677 0.88 1465561 128 24585 2055795 1.18 2080380 129 15349 1988296 0.77 2003645 130 11900 1269578 0.93 1281478 131 11513 1252984 0.91 1264497 132 12330 1345405 0.91 1357735 133 11726 1277916 0.91 1289642 134 10538 1189844 0.88 1200382 135 11489 1301625 0.87 1313114 136 19232 2605040 0.73 2624272 137 11744 1380790 0.84 1392534 138 12528 1249710 0.99 1262238 139 10962 1251040 0.87 1262002 140 10352 1190223 0.86 1200575 141 10601 1180948 0.89 1191549 142 10504 1137536 0.91 1148040 143 11203 1147616 0.97 1158819 144 32434 2411886 1.33 2444320 145 11795 1241160 0.94 1252955 146 10652 1174467 0.90 1185119 147 10024 1051544 0.94 1061568 148 7142 400418 1.75 407560 149 10551 465936 2.21 476487 150 12643 585069 2.12 597712 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 108108 2755499 3.78 2863607 2 491240 8292023 5.59 8783263 3 463622 7652027 5.71 8115649 4 241530 11553638 2.05 11795168 5 253657 10587725 2.34 10841382 6 231941 11720483 1.94 11952424 7 221360 11027118 1.97 11248478 8 247537 11014771 2.20 11262308 9 239312 10688922 2.19 10928234 10 208288 10852029 1.88 11060317 11 227642 10983503 2.03 11211145 12 244704 12008356 2.00 12253060 13 271951 11703685 2.27 11975636 14 260776 10716338 2.38 10977114 15 207812 12227576 1.67 12435388 16 216146 11194686 1.89 11410832 17 222191 11684490 1.87 11906681 18 210609 12112463 1.71 12323072 19 232211 11184877 2.03 11417088 20 219330 11049230 1.95 11268560 21 230323 11534370 1.96 11764693 22 272150 11834363 2.25 12106513 23 259681 11269384 2.25 11529065 24 210332 11297583 1.83 11507915 25 236614 10833290 2.14 11069904 26 219195 10826433 1.98 11045628 27 212239 11985833 1.74 12198072 28 191815 11017991 1.71 11209806 29 177221 10316659 1.69 10493880 30 155054 11087588 1.38 11242642 31 143304 10563490 1.34 10706794 32 127858 10215054 1.24 10342912 33 113511 10452619 1.07 10566130 34 110323 10254642 1.06 10364965 35 107438 10570863 1.01 10678301 36 86559 10352886 0.83 10439445 37 89624 11188807 0.79 11278431 38 87716 10675606 0.81 10763322 39 83056 9909352 0.83 9992408 40 83332 10231632 0.81 10314964 41 78027 9785049 0.79 9863076 42 79186 9878664 0.80 9957850 43 79532 10508160 0.75 10587692 44 78338 10442542 0.74 10520880 45 75088 10119716 0.74 10194804 46 74942 9606982 0.77 9681924 47 74929 9517607 0.78 9592536 48 73265 10538293 0.69 10611558 49 70782 10342578 0.68 10413360 50 73589 9475754 0.77 9549343 51 77792 10047822 0.77 10125614 52 65332 8823989 0.73 8889321 53 67764 8995706 0.75 9063470 54 72647 9905709 0.73 9978356 55 68097 9465860 0.71 9533957 56 66261 8831362 0.74 8897623 57 67867 9109459 0.74 9177326 58 68481 9255699 0.73 9324180 59 64760 8496229 0.76 8560989 60 64589 8783107 0.73 8847696 61 61609 8405881 0.73 8467490 62 66211 8851536 0.74 8917747 63 68236 9464613 0.72 9532849 64 64885 8327421 0.77 8392306 65 66156 8604263 0.76 8670419 66 64507 8301352 0.77 8365859 67 64367 9005180 0.71 9069547 68 62112 8743954 0.71 8806066 69 61555 8379197 0.73 8440752 70 68362 9558133 0.71 9626495 71 62416 7767870 0.80 7830286 72 64359 8794508 0.73 8858867 73 62834 8404735 0.74 8467569 74 58813 7710076 0.76 7768889 75 64868 8901132 0.72 8966000 76 61374 8338256 0.73 8399630 77 61632 8484523 0.72 8546155 78 62040 8272296 0.74 8334336 79 59286 7596279 0.77 7655565 80 59417 8421690 0.70 8481107 81 54094 7322655 0.73 7376749 82 60290 7886284 0.76 7946574 83 55617 7268449 0.76 7324066 84 53129 7123422 0.74 7176551 85 53817 7338490 0.73 7392307 86 55252 7014107 0.78 7069359 87 57509 6743540 0.85 6801049 88 50190 6755428 0.74 6805618 89 52265 6867320 0.76 6919585 90 52790 7310244 0.72 7363034 91 51726 7187714 0.71 7239440 92 51081 6634559 0.76 6685640 93 51094 6597120 0.77 6648214 94 49088 6464517 0.75 6513605 95 48759 6486652 0.75 6535411 96 51910 7176360 0.72 7228270 97 51043 7004233 0.72 7055276 98 47574 6076032 0.78 6123606 99 50314 6653208 0.75 6703522 100 45839 6161081 0.74 6206920 101 48833 6584169 0.74 6633002 102 49962 6674723 0.74 6724685 103 45936 5821549 0.78 5867485 104 47111 5749173 0.81 5796284 105 57197 6784039 0.84 6841236 106 44427 5851373 0.75 5895800 107 49162 6338785 0.77 6387947 108 50404 6945234 0.72 6995638 109 44948 5804382 0.77 5849330 110 48115 5999612 0.80 6047727 111 42766 5614968 0.76 5657734 112 41349 5437554 0.75 5478903 113 40330 5192339 0.77 5232669 114 41370 5321320 0.77 5362690 115 46427 6241664 0.74 6288091 116 45523 5613182 0.80 5658705 117 42347 5792914 0.73 5835261 118 45534 6483830 0.70 6529364 119 41218 5142369 0.80 5183587 120 38422 4736367 0.80 4774789 121 40539 5110795 0.79 5151334 122 41642 5398890 0.77 5440532 123 41330 5548617 0.74 5589947 124 38610 5327299 0.72 5365909 125 35720 4399531 0.81 4435251 126 35149 4384929 0.80 4420078 127 40693 5090385 0.79 5131078 128 40240 5042025 0.79 5082265 129 37634 4782695 0.78 4820329 130 38856 5745882 0.67 5784738 131 34963 4461651 0.78 4496614 132 37867 4799448 0.78 4837315 133 37838 4949674 0.76 4987512 134 35017 4189627 0.83 4224644 135 34311 3982881 0.85 4017192 136 31445 3908661 0.80 3940106 137 36558 4573418 0.79 4609976 138 32730 4029595 0.81 4062325 139 38445 4769018 0.80 4807463 140 34128 3835444 0.88 3869572 141 33911 3894923 0.86 3928834 142 33295 3822959 0.86 3856254 143 36286 4247397 0.85 4283683 144 43550 4024017 1.07 4067567 145 31875 3638517 0.87 3670392 146 33254 3542714 0.93 3575968 147 29823 3506081 0.84 3535904 148 18485 1137151 1.60 1155636 149 16406 1154616 1.40 1171022 150 23187 1654277 1.38 1677464 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 736394 14023208 4.99 14759602 2 571960 51885 91.68 623845 3 13491 586596 2.25 600087 4 16231 1103230 1.45 1119461 5 19659 862639 2.23 882298 6 18992 832717 2.23 851709 7 18895 876866 2.11 895761 8 22510 903159 2.43 925669 9 33970 915031 3.58 949001 10 35718 930236 3.70 965954 11 18406 952409 1.90 970815 12 19115 960971 1.95 980086 13 18032 945724 1.87 963756 14 18454 934483 1.94 952937 15 39756 988282 3.87 1028038 16 117346 950033 10.99 1067379 17 25573 909455 2.73 935028 18 17164 859433 1.96 876597 19 18953 859993 2.16 878946 20 19445 852129 2.23 871574 21 18182 874606 2.04 892788 22 17427 860415 1.99 877842 23 16749 810261 2.03 827010 24 14382 728406 1.94 742788 25 13976 798360 1.72 812336 26 14299 757054 1.85 771353 27 13456 740696 1.78 754152 28 12680 723758 1.72 736438 29 14760 740480 1.95 755240 30 16830 803251 2.05 820081 31 17054 849521 1.97 866575 32 15223 731083 2.04 746306 33 14780 747208 1.94 761988 34 16077 774796 2.03 790873 35 12208 635262 1.89 647470 36 11743 629714 1.83 641457 37 13638 692137 1.93 705775 38 12884 691564 1.83 704448 39 11228 643011 1.72 654239 40 13918 686828 1.99 700746 41 13186 663639 1.95 676825 42 11028 632403 1.71 643431 43 11664 647750 1.77 659414 44 11592 599072 1.90 610664 45 10703 529513 1.98 540216 46 10517 546962 1.89 557479 47 10205 578671 1.73 588876 48 10604 583500 1.78 594104 49 10001 558905 1.76 568906 50 9838 540661 1.79 550499 51 11649 593060 1.93 604709 52 11378 624229 1.79 635607 53 9744 517323 1.85 527067 54 9073 517433 1.72 526506 55 9155 524689 1.71 533844 56 8706 498005 1.72 506711 57 9152 488686 1.84 497838 58 10203 557352 1.80 567555 59 10792 541764 1.95 552556 60 7974 457382 1.71 465356 61 8025 471649 1.67 479674 62 7896 497231 1.56 505127 63 8105 471090 1.69 479195 64 7767 459748 1.66 467515 65 7697 429297 1.76 436994 66 7099 425133 1.64 432232 67 7533 466504 1.59 474037 68 7318 429833 1.67 437151 69 7266 403369 1.77 410635 70 7361 416139 1.74 423500 71 7763 411070 1.85 418833 72 7610 411094 1.82 418704 73 7431 417148 1.75 424579 74 8008 397426 1.98 405434 75 6912 398601 1.70 405513 76 6621 375128 1.73 381749 77 6522 361381 1.77 367903 78 5602 343860 1.60 349462 79 5924 323748 1.80 329672 80 5338 326566 1.61 331904 81 5504 339760 1.59 345264 82 6258 411578 1.50 417836 83 5902 418751 1.39 424653 84 5534 348991 1.56 354525 85 6632 338948 1.92 345580 86 8594 404298 2.08 412892 87 7153 420378 1.67 427531 88 8683 333656 2.54 342339 89 5204 310854 1.65 316058 90 5422 314430 1.70 319852 91 5468 288848 1.86 294316 92 4699 291273 1.59 295972 93 6952 403189 1.70 410141 94 7350 361296 1.99 368646 95 5030 290656 1.70 295686 96 4505 263057 1.68 267562 97 4295 262192 1.61 266487 98 4136 253345 1.61 257481 99 4419 295930 1.47 300349 100 4219 275431 1.51 279650 101 4018 241260 1.64 245278 102 3818 258258 1.46 262076 103 4079 275740 1.46 279819 104 6256 292811 2.09 299067 105 4937 253289 1.91 258226 106 3551 244473 1.43 248024 107 3950 226095 1.72 230045 108 3650 230525 1.56 234175 109 3967 252102 1.55 256069 110 3849 228242 1.66 232091 111 6584 267255 2.40 273839 112 6471 270828 2.33 277299 113 5626 262605 2.10 268231 114 5580 268062 2.04 273642 115 3830 232357 1.62 236187 116 5371 225714 2.32 231085 117 3007 191623 1.54 194630 118 3100 232920 1.31 236020 119 2942 186223 1.56 189165 120 3633 201489 1.77 205122 121 10025 194596 4.90 204621 122 3489 207601 1.65 211090 123 3058 186566 1.61 189624 124 3037 194244 1.54 197281 125 3104 174843 1.74 177947 126 2657 169661 1.54 172318 127 2773 179347 1.52 182120 128 4543 211814 2.10 216357 129 4006 197894 1.98 201900 130 2744 160398 1.68 163142 131 2664 151680 1.73 154344 132 2507 150476 1.64 152983 133 2542 156698 1.60 159240 134 2537 157694 1.58 160231 135 2403 154114 1.54 156517 136 2560 166100 1.52 168660 137 2360 163212 1.43 165572 138 2507 159636 1.55 162143 139 2802 163527 1.68 166329 140 3945 189014 2.04 192959 141 2422 153452 1.55 155874 142 2149 145152 1.46 147301 143 2156 150777 1.41 152933 144 7459 227886 3.17 235345 145 28507 134241 17.52 162748 146 2304 129972 1.74 132276 147 1922 118281 1.60 120203 148 1951 76717 2.48 78668 149 1083 68565 1.55 69648 150 998 64670 1.52 65668 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 78801 12029947 0.65 12108748 2 45108 114371 28.28 159479 3 187633 88197 68.02 275830 4 6905 1159015 0.59 1165920 5 6516 825210 0.78 831726 6 9987 1017797 0.97 1027784 7 9576 845812 1.12 855388 8 18759 805311 2.28 824070 9 9002 997597 0.89 1006599 10 9328 922075 1.00 931403 11 7256 810525 0.89 817781 12 6735 824745 0.81 831480 13 7398 960763 0.76 968161 14 6944 937102 0.74 944046 15 7009 792010 0.88 799019 16 7348 936846 0.78 944194 17 6927 822338 0.84 829265 18 6711 847871 0.79 854582 19 6811 905045 0.75 911856 20 6475 790214 0.81 796689 21 6552 804703 0.81 811255 22 6560 854515 0.76 861075 23 6159 706009 0.86 712168 24 6025 711172 0.84 717197 25 5476 703016 0.77 708492 26 5852 764364 0.76 770216 27 5717 747175 0.76 752892 28 5684 669147 0.84 674831 29 5469 680643 0.80 686112 30 5606 707760 0.79 713366 31 5402 696794 0.77 702196 32 5116 626805 0.81 631921 33 5357 648349 0.82 653706 34 5762 786420 0.73 792182 35 5023 638921 0.78 643944 36 5352 676784 0.78 682136 37 5145 679523 0.75 684668 38 5367 723114 0.74 728481 39 5124 622262 0.82 627386 40 5000 631602 0.79 636602 41 4657 583599 0.79 588256 42 4493 555217 0.80 559710 43 4700 630981 0.74 635681 44 4583 613809 0.74 618392 45 4465 585710 0.76 590175 46 4727 635516 0.74 640243 47 4505 545873 0.82 550378 48 4296 528398 0.81 532694 49 4142 518464 0.79 522606 50 4259 554036 0.76 558295 51 4144 571637 0.72 575781 52 4212 524418 0.80 528630 53 3928 520101 0.75 524029 54 4165 508674 0.81 512839 55 3974 519032 0.76 523006 56 3691 473751 0.77 477442 57 3781 490636 0.76 494417 58 4027 527046 0.76 531073 59 3604 467710 0.76 471314 60 3690 436637 0.84 440327 61 3260 415653 0.78 418913 62 3252 432942 0.75 436194 63 3337 456100 0.73 459437 64 3440 458778 0.74 462218 65 3323 440769 0.75 444092 66 3238 414000 0.78 417238 67 3381 433925 0.77 437306 68 3341 430169 0.77 433510 69 2990 389360 0.76 392350 70 3057 373647 0.81 376704 71 2900 376665 0.76 379565 72 2928 396170 0.73 399098 73 2752 348082 0.78 350834 74 2709 363521 0.74 366230 75 2992 368689 0.80 371681 76 2831 369484 0.76 372315 77 2669 345734 0.77 348403 78 2642 362597 0.72 365239 79 2582 342758 0.75 345340 80 2600 317528 0.81 320128 81 2835 399624 0.70 402459 82 2485 351500 0.70 353985 83 2675 341383 0.78 344058 84 3046 346251 0.87 349297 85 2447 319683 0.76 322130 86 2577 331307 0.77 333884 87 2476 319423 0.77 321899 88 2095 302817 0.69 304912 89 2191 283951 0.77 286142 90 2320 292499 0.79 294819 91 2329 336711 0.69 339040 92 2131 264489 0.80 266620 93 2287 290638 0.78 292925 94 2195 329913 0.66 332108 95 1963 253078 0.77 255041 96 2128 283580 0.74 285708 97 2092 300568 0.69 302660 98 1883 247559 0.75 249442 99 2119 262205 0.80 264324 100 1972 258267 0.76 260239 101 1831 238627 0.76 240458 102 1885 251291 0.74 253176 103 1869 273409 0.68 275278 104 1951 263958 0.73 265909 105 1815 232101 0.78 233916 106 1931 246618 0.78 248549 107 2061 294941 0.69 297002 108 1536 196844 0.77 198380 109 1666 233849 0.71 235515 110 1495 212289 0.70 213784 111 2595 373433 0.69 376028 112 1575 208287 0.75 209862 113 1477 188231 0.78 189708 114 2323 300515 0.77 302838 115 1424 200995 0.70 202419 116 1399 192026 0.72 193425 117 1449 187919 0.77 189368 118 1244 179986 0.69 181230 119 1341 195937 0.68 197278 120 1716 204430 0.83 206146 121 1750 197872 0.88 199622 122 1362 166588 0.81 167950 123 1565 219769 0.71 221334 124 1358 181929 0.74 183287 125 1199 147376 0.81 148575 126 1196 162529 0.73 163725 127 1342 171460 0.78 172802 128 2333 172863 1.33 175196 129 1206 166968 0.72 168174 130 1098 151285 0.72 152383 131 1195 178705 0.66 179900 132 1024 147036 0.69 148060 133 1213 150839 0.80 152052 134 1116 146882 0.75 147998 135 1261 175828 0.71 177089 136 1590 231030 0.68 232620 137 974 134308 0.72 135282 138 1123 148664 0.75 149787 139 958 127469 0.75 128427 140 1045 148762 0.70 149807 141 950 134316 0.70 135266 142 982 129420 0.75 130402 143 1206 153709 0.78 154915 144 1180 219089 0.54 220269 145 1121 122930 0.90 124051 146 852 125961 0.67 126813 147 891 113055 0.78 113946 148 719 67326 1.06 68045 149 626 65142 0.95 65768 150 454 58494 0.77 58948 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 78007 995472 7.27 1073479 2 89127 2198423 3.90 2287550 3 46360 2104259 2.16 2150619 4 40434 3680712 1.09 3721146 5 48557 3207099 1.49 3255656 6 30584 3342981 0.91 3373565 7 28482 3318383 0.85 3346865 8 32246 3265074 0.98 3297320 9 32103 3180334 1.00 3212437 10 28801 3102686 0.92 3131487 11 26442 3193373 0.82 3219815 12 34828 3175221 1.08 3210049 13 44735 3246271 1.36 3291006 14 26973 2890245 0.92 2917218 15 25637 3063958 0.83 3089595 16 24672 3008036 0.81 3032708 17 24954 3041856 0.81 3066810 18 24060 2982999 0.80 3007059 19 24197 2878000 0.83 2902197 20 23049 2732199 0.84 2755248 21 22939 2735239 0.83 2758178 22 23202 2869081 0.80 2892283 23 21809 2621778 0.82 2643587 24 22356 2710029 0.82 2732385 25 21445 2781563 0.77 2803008 26 20813 2487242 0.83 2508055 27 21057 2622874 0.80 2643931 28 20220 2598359 0.77 2618579 29 19681 2451597 0.80 2471278 30 20055 2543494 0.78 2563549 31 19671 2372184 0.82 2391855 32 19301 2260617 0.85 2279918 33 19271 2403840 0.80 2423111 34 19801 2474177 0.79 2493978 35 18808 2357261 0.79 2376069 36 18904 2292545 0.82 2311449 37 18027 2224282 0.80 2242309 38 18260 2195776 0.82 2214036 39 17464 2165165 0.80 2182629 40 18294 2142916 0.85 2161210 41 17090 2128013 0.80 2145103 42 16544 2056263 0.80 2072807 43 17252 2135538 0.80 2152790 44 16011 2015261 0.79 2031272 45 16777 2082310 0.80 2099087 46 16118 1941234 0.82 1957352 47 16013 1939221 0.82 1955234 48 15880 2018745 0.78 2034625 49 15657 2044488 0.76 2060145 50 14812 1870150 0.79 1884962 51 14649 1830284 0.79 1844933 52 14553 1817133 0.79 1831686 53 14180 1760384 0.80 1774564 54 14302 1799044 0.79 1813346 55 14281 1819024 0.78 1833305 56 13104 1679449 0.77 1692553 57 13541 1700330 0.79 1713871 58 13431 1680520 0.79 1693951 59 12809 1561871 0.81 1574680 60 12967 1640579 0.78 1653546 61 12760 1656920 0.76 1669680 62 12851 1629972 0.78 1642823 63 12862 1653940 0.77 1666802 64 11893 1508492 0.78 1520385 65 12507 1503215 0.83 1515722 66 11337 1516339 0.74 1527676 67 11593 1549335 0.74 1560928 68 11034 1459305 0.75 1470339 69 11395 1462070 0.77 1473465 70 11538 1556039 0.74 1567577 71 11106 1413090 0.78 1424196 72 10883 1462635 0.74 1473518 73 10421 1403130 0.74 1413551 74 10707 1330393 0.80 1341100 75 10774 1435026 0.75 1445800 76 10682 1431346 0.74 1442028 77 9921 1364966 0.72 1374887 78 10005 1305401 0.76 1315406 79 9762 1242365 0.78 1252127 80 9566 1265497 0.75 1275063 81 9425 1172308 0.80 1181733 82 9425 1202622 0.78 1212047 83 9235 1160820 0.79 1170055 84 8750 1130345 0.77 1139095 85 8809 1147588 0.76 1156397 86 8682 1098462 0.78 1107144 87 9089 1124851 0.80 1133940 88 8495 1109221 0.76 1117716 89 8327 1080418 0.76 1088745 90 8173 1063363 0.76 1071536 91 8176 1067046 0.76 1075222 92 8309 1033375 0.80 1041684 93 7863 1028192 0.76 1036055 94 7622 999745 0.76 1007367 95 7837 1006365 0.77 1014202 96 7658 1054725 0.72 1062383 97 7619 989079 0.76 996698 98 7249 945110 0.76 952359 99 7330 972966 0.75 980296 100 7457 952101 0.78 959558 101 7385 955432 0.77 962817 102 6841 933415 0.73 940256 103 6862 886133 0.77 892995 104 6646 886217 0.74 892863 105 7914 959940 0.82 967854 106 6294 830680 0.75 836974 107 6919 905395 0.76 912314 108 6743 926985 0.72 933728 109 6570 816104 0.80 822674 110 6248 828915 0.75 835163 111 5890 764222 0.76 770112 112 5866 790862 0.74 796728 113 5817 739987 0.78 745804 114 6032 737393 0.81 743425 115 6050 812473 0.74 818523 116 5602 714819 0.78 720421 117 5345 703391 0.75 708736 118 5549 747574 0.74 753123 119 5457 683563 0.79 689020 120 5009 656303 0.76 661312 121 5135 677394 0.75 682529 122 5376 706069 0.76 711445 123 4998 686213 0.72 691211 124 4897 671059 0.72 675956 125 4646 596870 0.77 601516 126 4781 610465 0.78 615246 127 5193 643270 0.80 648463 128 4717 643171 0.73 647888 129 4550 638643 0.71 643193 130 4877 696044 0.70 700921 131 4322 550471 0.78 554793 132 4564 604592 0.75 609156 133 4371 607506 0.71 611877 134 4048 545739 0.74 549787 135 4225 536512 0.78 540737 136 3957 499968 0.79 503925 137 4251 589227 0.72 593478 138 4080 510310 0.79 514390 139 4444 539650 0.82 544094 140 3944 483272 0.81 487216 141 3694 474861 0.77 478555 142 3734 464550 0.80 468284 143 4040 529080 0.76 533120 144 3498 466712 0.74 470210 145 3952 477776 0.82 481728 146 3601 467320 0.76 470921 147 3294 444531 0.74 447825 148 3026 245189 1.22 248215 149 2438 235441 1.02 237879 150 2087 222757 0.93 224844