Meth9_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 19096272 lines in total Total number of methylation call strings processed: 38192544 Final Cytosine Methylation Report ================================= Total number of C's analysed: 492634959 Total methylated C's in CpG context: 31971036 Total methylated C's in CHG context: 2027790 Total methylated C's in CHH context: 7011337 Total C to T conversions in CpG context: 37411250 Total C to T conversions in CHG context: 91269177 Total C to T conversions in CHH context: 322944369 C methylated in CpG context: 46.1% C methylated in CHG context: 2.2% C methylated in CHH context: 2.1%