Meth8_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 20467954 lines in total Total number of methylation call strings processed: 40935908 Final Cytosine Methylation Report ================================= Total number of C's analysed: 578747468 Total methylated C's in CpG context: 69456938 Total methylated C's in CHG context: 3092060 Total methylated C's in CHH context: 9749147 Total C to T conversions in CpG context: 18440099 Total C to T conversions in CHG context: 110988459 Total C to T conversions in CHH context: 367020765 C methylated in CpG context: 79.0% C methylated in CHG context: 2.7% C methylated in CHH context: 2.6%