Meth2_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 23329526 lines in total Total number of methylation call strings processed: 46659052 Final Cytosine Methylation Report ================================= Total number of C's analysed: 632912734 Total methylated C's in CpG context: 5097424 Total methylated C's in CHG context: 1441796 Total methylated C's in CHH context: 5673743 Total C to T conversions in CpG context: 91181452 Total C to T conversions in CHG context: 112911809 Total C to T conversions in CHH context: 416606510 C methylated in CpG context: 5.3% C methylated in CHG context: 1.3% C methylated in CHH context: 1.3%