A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2021-05-09, 00:16 based on data in:
/gscratch/scrubbed/sr320/040421-alan
General Statistics
Showing 32/32 rows and 6/8 columns.| Sample Name | % mCpG | % mCHG | % mCHH | M C's | % Dups | % Aligned |
|---|---|---|---|---|---|---|
| CF01-CM01-Zygote_R1_001_val_1 | 17.0% | 1.3% | 4.1% | 41.1 | 26.5% | 14.4% |
| CF01-CM02-Larvae_R1_001_val_1 | 18.5% | 1.8% | 3.2% | 312.4 | 23.7% | 35.3% |
| CF02-CM02-Zygote_R1_001_val_1 | 20.2% | 4.2% | 8.6% | 68.8 | 31.2% | 15.1% |
| CF03-CM03-Zygote_R1_001_val_1 | 20.9% | 2.5% | 5.5% | 150.1 | 24.4% | 25.6% |
| CF03-CM04-Larvae_R1_001_val_1 | 17.8% | 1.2% | 1.8% | 286.5 | 44.6% | 43.6% |
| CF03-CM05-Larvae_R1_001_val_1 | 19.7% | 2.9% | 4.2% | 249.7 | 22.8% | 35.1% |
| CF04-CM04-Zygote_R1_001_val_1 | 19.5% | 2.4% | 4.4% | 115.7 | 25.7% | 26.2% |
| CF05-CM02-Larvae_R1_001_val_1 | 18.0% | 1.3% | 2.3% | 262.0 | 25.1% | 35.7% |
| CF05-CM05-Zygote_R1_001_val_1 | 21.5% | 2.9% | 5.2% | 215.8 | 25.5% | 26.5% |
| CF06-CM01-Zygote_R1_001_val_1 | 21.8% | 3.1% | 6.0% | 195.0 | 24.5% | 26.0% |
| CF06-CM02-Larvae_R1_001_val_1 | 24.7% | 5.1% | 8.3% | 136.9 | 25.2% | 24.0% |
| CF07-CM02-Zygote_R1_001_val_1 | 18.7% | 1.8% | 5.7% | 64.9 | 34.1% | 12.5% |
| CF08-CM03-Zygote_R1_001_val_1 | 19.4% | 2.9% | 6.5% | 97.3 | 31.4% | 19.8% |
| CF08-CM04-Larvae_R1_001_val_1 | 18.5% | 3.9% | 23.5% | 8.1 | 45.0% | 2.3% |
| CF08-CM05-Larvae_R1_001_val_1 | 15.0% | 2.0% | 8.7% | 5.9 | 82.9% | 2.7% |
| EF01-EM01-Zygote_R1_001_val_1 | 24.7% | 4.5% | 7.2% | 131.6 | 24.7% | 24.8% |
| EF02-EM02-Zygote_R1_001_val_1 | 15.7% | 1.4% | 3.8% | 146.6 | 23.8% | 24.9% |
| EF03-EM03-Zygote_R1_001_val_1 | 21.3% | 3.5% | 6.6% | 190.0 | 31.2% | 18.3% |
| EF03-EM04-Larvae_R1_001_val_1 | 22.2% | 4.8% | 6.4% | 295.2 | 25.2% | 32.2% |
| EF03-EM05-Larvae_R1_001_val_1 | 20.4% | 3.2% | 4.7% | 237.0 | 22.5% | 30.2% |
| EF04-EM04-Zygote_R1_001_val_1 | 17.9% | 4.1% | 6.6% | 68.0 | 28.0% | 13.6% |
| EF04-EM05-Larvae_R1_001_val_1 | 17.7% | 1.3% | 2.0% | 245.1 | 26.0% | 36.2% |
| EF05-EM01-Larvae_R1_001_val_1 | 18.7% | 1.5% | 2.9% | 166.8 | 25.9% | 30.3% |
| EF05-EM05-Zygote_R1_001_val_1 | 13.0% | 1.8% | 7.0% | 28.6 | 27.5% | 9.1% |
| EF05-EM06-Larvae_R1_001_val_1 | 19.6% | 4.7% | 5.7% | 333.4 | 38.0% | 34.7% |
| EF06-EM01-Larvae_R1_001_val_1 | 17.6% | 1.5% | 2.2% | 299.7 | 23.4% | 33.9% |
| EF06-EM02-Larvae_R1_001_val_1 | 20.5% | 2.4% | 3.5% | 254.1 | 25.3% | 36.3% |
| EF06-EM06-Larvae_R1_001_val_1 | 20.4% | 3.8% | 5.9% | 119.8 | 62.5% | 27.1% |
| EF07-EM01-Zygote_R1_001_val_1 | 15.7% | 1.3% | 4.7% | 57.0 | 39.7% | 10.9% |
| EF07-EM03-Larvae_R1_001_val_1 | 18.3% | 1.5% | 2.4% | 217.1 | 27.0% | 32.3% |
| EF08-EM03-Larvae_R1_001_val_1 | 18.7% | 1.1% | 2.1% | 226.0 | 32.7% | 36.6% |
| EF08-EM04-Larvae_R1_001_val_1 | 20.3% | 2.3% | 3.9% | 262.4 | 24.7% | 35.6% |
Bismark
Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.
Alignment Rates
Deduplication
Strand Alignment
Cytosine Methylation
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M-Bias
This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.
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