[2021-05-09 00:16:47,332] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2021-05-09 00:16:47,333] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/sr320/.multiqc_config.yaml [2021-05-09 00:16:47,333] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-05-09 00:16:47,333] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-05-09 00:16:52,634] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2021-05-09 00:16:52,634] multiqc [INFO ] This is MultiQC v1.8 [2021-05-09 00:16:52,635] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-05-09 00:16:52,635] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/sr320/040421-alan [2021-05-09 00:16:52,635] multiqc [INFO ] Template : default [2021-05-09 00:16:52,636] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2021-05-09 00:16:52,636] multiqc [INFO ] Searching : /gscratch/scrubbed/sr320/040421-alan [2021-05-09 00:16:52,637] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2021-05-09 00:16:52,637] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp07ob74_d [2021-05-09 00:16:53,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF01-CM02-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:53,217] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM04-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:53,360] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF04-EM05-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:53,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF01-CM01-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:53,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM05-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:53,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM02-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:53,390] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF02-EM02-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:53,391] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM03-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:53,391] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF06-CM01-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:53,392] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF06-CM01-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:53,424] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bismark_summary_report.txt [2021-05-09 00:16:53,428] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bismark_summary_report.txt [2021-05-09 00:16:53,459] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF02-CM02-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:53,460] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF07-CM02-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:53,462] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM05-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:53,463] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM04-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:53,463] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF07-EM01-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:53,464] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM04-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:53,464] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF07-EM01-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:53,465] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM06-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:53,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF05-CM02-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:53,471] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF05-CM05-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:53,472] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF08-EM04-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:53,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF07-EM03-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:53,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF05-CM02-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:53,474] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF01-EM01-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:53,475] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF02-EM02-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:53,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM06-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:53,479] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF06-CM02-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:53,479] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF04-EM04-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:53,479] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM03-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:53,480] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM01-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:53,546] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-1905203.out [2021-05-09 00:16:53,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-1905203.out [2021-05-09 00:16:53,549] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: slurm-1905203.out [2021-05-09 00:16:53,549] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: slurm-1905203.out [2021-05-09 00:16:53,549] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: slurm-1905203.out [2021-05-09 00:16:53,549] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: slurm-1905203.out [2021-05-09 00:16:53,573] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: slurm-1905203.out [2021-05-09 00:16:54,558] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF07-EM03-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF08-EM04-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF04-EM04-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF08-EM04-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,561] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF01-EM01-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,561] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM05-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,561] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF05-CM05-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,561] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM01-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF04-CM04-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: bismark_summary_report.html [2021-05-09 00:16:54,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM05-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF08-EM03-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF02-EM02-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM02-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,564] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM04-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,565] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF05-CM02-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,566] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM01-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM01-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF08-EM03-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF01-CM02-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM03-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM03-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,569] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF04-EM05-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,570] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM01-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,571] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF07-EM01-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,571] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF04-CM04-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,572] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF04-EM04-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,572] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM03-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,572] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM05-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,573] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF07-CM02-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,573] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF04-EM05-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,574] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM06-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,574] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM05-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,574] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM04-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,575] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF01-CM01-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,575] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM01-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,576] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF06-CM02-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,577] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF05-CM05-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,577] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM05-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,577] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF01-CM02-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,577] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM06-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,579] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF06-CM01-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,580] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF07-EM03-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,580] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF02-CM02-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,580] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM03-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,580] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM03-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,580] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM05-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,581] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM04-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,581] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF01-EM01-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,581] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF08-EM03-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,590] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: job.sh [2021-05-09 00:16:54,599] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM04-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF02-CM02-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,602] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM06-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,602] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM05-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,602] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM03-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,602] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF04-CM04-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,603] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM05-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,603] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF06-CM02-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,603] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF05-EM06-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,604] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF07-CM02-Zygote_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM05-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF01-CM01-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF06-EM02-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM03-Zygote_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:54,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF03-CM05-Larvae_R1_001_val_1_bismark_bt2_PE_report.html [2021-05-09 00:16:54,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CF08-CM04-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2021-05-09 00:16:54,608] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EF03-EM04-Larvae_R1_001_val_1_bismark_bt2_pe.bam [2021-05-09 00:16:59,387] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2021-05-09 00:16:59,400] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2021-05-09 00:16:59,425] multiqc [DEBUG ] No samples found: custom_content [2021-05-09 00:16:59,464] multiqc [DEBUG ] No samples found: conpair [2021-05-09 00:16:59,561] multiqc [DEBUG ] No samples found: peddy [2021-05-09 00:16:59,635] multiqc [DEBUG ] No samples found: methylQA [2021-05-09 00:16:59,664] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-05-09 00:16:59,771] multiqc [DEBUG ] No samples found: qualimap [2021-05-09 00:16:59,814] multiqc [DEBUG ] No samples found: preseq [2021-05-09 00:16:59,862] multiqc [DEBUG ] No samples found: quast [2021-05-09 00:16:59,897] multiqc [DEBUG ] No samples found: qorts [2021-05-09 00:16:59,988] multiqc [DEBUG ] No samples found: rna_seqc [2021-05-09 00:17:00,045] multiqc [DEBUG ] No samples found: rsem [2021-05-09 00:17:00,163] multiqc [DEBUG ] No samples found: rseqc [2021-05-09 00:17:00,186] multiqc [DEBUG ] No samples found: busco [2021-05-09 00:17:00,228] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-05-09 00:17:00,281] multiqc [DEBUG ] No samples found: disambiguate [2021-05-09 00:17:00,304] multiqc [DEBUG ] No samples found: supernova [2021-05-09 00:17:00,466] multiqc [DEBUG ] No samples found: deeptools [2021-05-09 00:17:00,516] multiqc [DEBUG ] No samples found: sargasso [2021-05-09 00:17:00,550] multiqc [DEBUG ] No samples found: verifybamid [2021-05-09 00:17:00,567] multiqc [DEBUG ] No samples found: mirtrace [2021-05-09 00:17:00,587] multiqc [DEBUG ] No samples found: happy [2021-05-09 00:17:00,635] multiqc [DEBUG ] No samples found: homer [2021-05-09 00:17:00,660] multiqc [DEBUG ] No samples found: macs2 [2021-05-09 00:17:00,670] multiqc [DEBUG ] No samples found: theta2 [2021-05-09 00:17:00,690] multiqc [DEBUG ] No samples found: snpeff [2021-05-09 00:17:00,760] multiqc [DEBUG ] No samples found: gatk [2021-05-09 00:17:00,794] multiqc [DEBUG ] No samples found: htseq [2021-05-09 00:17:00,859] multiqc [DEBUG ] No samples found: bcftools [2021-05-09 00:17:00,870] multiqc [DEBUG ] No samples found: featureCounts [2021-05-09 00:17:00,884] multiqc [DEBUG ] No samples found: fgbio [2021-05-09 00:17:00,895] multiqc [DEBUG ] No samples found: dedup [2021-05-09 00:17:00,918] multiqc [DEBUG ] No samples found: damageprofiler [2021-05-09 00:17:01,100] multiqc [DEBUG ] No samples found: biobambam2 [2021-05-09 00:17:01,123] multiqc [DEBUG ] No samples found: mtnucratio [2021-05-09 00:17:01,129] multiqc [DEBUG ] No samples found: picard [2021-05-09 00:17:01,160] multiqc [DEBUG ] No samples found: prokka [2021-05-09 00:17:01,170] multiqc [DEBUG ] No samples found: samblaster [2021-05-09 00:17:01,251] multiqc [DEBUG ] No samples found: samtools [2021-05-09 00:17:01,293] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-05-09 00:17:01,347] multiqc [DEBUG ] No samples found: bamtools [2021-05-09 00:17:01,357] multiqc [DEBUG ] No samples found: jellyfish [2021-05-09 00:17:01,426] multiqc [DEBUG ] No samples found: vcftools [2021-05-09 00:17:01,453] multiqc [DEBUG ] No samples found: longranger [2021-05-09 00:17:01,477] multiqc [DEBUG ] No samples found: stacks [2021-05-09 00:17:01,535] multiqc [DEBUG ] No samples found: bbmap [2021-05-09 00:17:01,716] multiqc.modules.bismark.bismark [INFO ] Found 32 bismark alignment reports [2021-05-09 00:17:01,719] multiqc.modules.bismark.bismark [INFO ] Found 32 bismark dedup reports [2021-05-09 00:17:01,720] multiqc.modules.bismark.bismark [INFO ] Found 32 bismark methextract reports [2021-05-09 00:17:01,782] multiqc [DEBUG ] No samples found: biscuit [2021-05-09 00:17:01,802] multiqc [DEBUG ] No samples found: hicexplorer [2021-05-09 00:17:01,824] multiqc [DEBUG ] No samples found: hicup [2021-05-09 00:17:01,844] multiqc [DEBUG ] No samples found: hicpro [2021-05-09 00:17:01,850] multiqc [DEBUG ] No samples found: salmon [2021-05-09 00:17:01,875] multiqc [DEBUG ] No samples found: kallisto [2021-05-09 00:17:01,894] multiqc [DEBUG ] No samples found: slamdunk [2021-05-09 00:17:01,936] multiqc [DEBUG ] No samples found: star [2021-05-09 00:17:01,956] multiqc [DEBUG ] No samples found: hisat2 [2021-05-09 00:17:01,996] multiqc [DEBUG ] No samples found: tophat [2021-05-09 00:17:02,021] multiqc [DEBUG ] No samples found: bowtie2 [2021-05-09 00:17:02,043] multiqc [DEBUG ] No samples found: bowtie1 [2021-05-09 00:17:02,053] multiqc [DEBUG ] No samples found: kat [2021-05-09 00:17:02,063] multiqc [DEBUG ] No samples found: leehom [2021-05-09 00:17:02,095] multiqc [DEBUG ] No samples found: adapterRemoval [2021-05-09 00:17:02,107] multiqc [DEBUG ] No samples found: clipandmerge [2021-05-09 00:17:02,138] multiqc [DEBUG ] No samples found: cutadapt [2021-05-09 00:17:02,148] multiqc [DEBUG ] No samples found: flexbar [2021-05-09 00:17:02,175] multiqc [DEBUG ] No samples found: trimmomatic [2021-05-09 00:17:02,192] multiqc [DEBUG ] No samples found: skewer [2021-05-09 00:17:02,202] multiqc [DEBUG ] No samples found: sortmerna [2021-05-09 00:17:02,214] multiqc [DEBUG ] No samples found: biobloomtools [2021-05-09 00:17:02,250] multiqc [DEBUG ] No samples found: fastq_screen [2021-05-09 00:17:02,288] multiqc [DEBUG ] No samples found: afterqc [2021-05-09 00:17:02,308] multiqc [DEBUG ] No samples found: fastp [2021-05-09 00:17:02,359] multiqc [DEBUG ] No samples found: fastqc [2021-05-09 00:17:02,384] multiqc [DEBUG ] No samples found: minionqc [2021-05-09 00:17:02,404] multiqc [DEBUG ] No samples found: mosdepth [2021-05-09 00:17:02,424] multiqc [DEBUG ] No samples found: clusterflow [2021-05-09 00:17:02,449] multiqc [DEBUG ] No samples found: bcl2fastq [2021-05-09 00:17:02,472] multiqc [DEBUG ] No samples found: interop [2021-05-09 00:17:02,505] multiqc [DEBUG ] No samples found: flash [2021-05-09 00:17:02,528] multiqc [DEBUG ] No samples found: seqyclean [2021-05-09 00:17:02,652] multiqc [INFO ] Compressing plot data [2021-05-09 00:17:03,191] multiqc [INFO ] Report : multiqc_report.html [2021-05-09 00:17:03,191] multiqc [INFO ] Data : multiqc_data [2021-05-09 00:17:03,192] multiqc [DEBUG ] Moving data file from '/tmp/tmp07ob74_d/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/sr320/040421-alan/multiqc_data' [2021-05-09 00:17:03,193] multiqc [DEBUG ] Moving data file from '/tmp/tmp07ob74_d/multiqc_data/multiqc_bismark_alignment.txt' to '/gscratch/scrubbed/sr320/040421-alan/multiqc_data' [2021-05-09 00:17:03,194] multiqc [DEBUG ] Moving data file from '/tmp/tmp07ob74_d/multiqc_data/multiqc_bismark_dedup.txt' to '/gscratch/scrubbed/sr320/040421-alan/multiqc_data' [2021-05-09 00:17:03,195] multiqc [DEBUG ] Moving data file from '/tmp/tmp07ob74_d/multiqc_data/multiqc_bismark_methextract.txt' to '/gscratch/scrubbed/sr320/040421-alan/multiqc_data' [2021-05-09 00:17:03,196] multiqc [DEBUG ] Moving data file from '/tmp/tmp07ob74_d/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/sr320/040421-alan/multiqc_data' [2021-05-09 00:17:03,196] multiqc [DEBUG ] Moving data file from '/tmp/tmp07ob74_d/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/sr320/040421-alan/multiqc_data' [2021-05-09 00:17:03,197] multiqc [DEBUG ] Moving data file from '/tmp/tmp07ob74_d/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/sr320/040421-alan/multiqc_data' [2021-05-09 00:17:04,115] multiqc [INFO ] MultiQC complete