EF08-EM04-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 16804375 lines in total Total number of methylation call strings processed: 33608750 Final Cytosine Methylation Report ================================= Total number of C's analysed: 262376593 Total methylated C's in CpG context: 7910157 Total methylated C's in CHG context: 1257384 Total methylated C's in CHH context: 6578903 Total C to T conversions in CpG context: 31080214 Total C to T conversions in CHG context: 54129192 Total C to T conversions in CHH context: 161420743 C methylated in CpG context: 20.3% C methylated in CHG context: 2.3% C methylated in CHH context: 3.9%