/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF08-EM04-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF08-EM04-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
62743331
Paired-end alignments with a unique best hit
22325576
Pairs without alignments under any condition
27547702
Pairs that did not map uniquely
12870053
Genomic sequence context not extractable (edges of chromosomes)
21
Cytosine Methylation
Total C's analysed
644792517
Methylated C's in CpG context
19814115
Methylated C's in CHG context
2991493
Methylated C's in CHH context
16246243
Methylated C's in Unknown context
475752
Unmethylated C's in CpG context
76585909
Unmethylated C's in CHG context
133823662
Unmethylated C's in CHH context
395331095
Unmethylated C's in Unknown context
2728318
Percentage methylation (CpG context)
20.6%
Percentage methylation (CHG context)
2.2%
Percentage methylation (CHH context)
3.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5482249
original top strand
CTOT
5667672
complementary to original top strand
CTOB
5684768
complementary to original bottom strand
OB
5490866
original bottom strand
Deduplication
Alignments analysed
22325555
Unique alignments
16804375
Duplicates removed
5521180
Duplicated alignments were found at 4120941 different positions
