/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF08-EM03-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF08-EM03-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
50784782
Paired-end alignments with a unique best hit
18568101
Pairs without alignments under any condition
21834010
Pairs that did not map uniquely
10382671
Genomic sequence context not extractable (edges of chromosomes)
3
Cytosine Methylation
Total C's analysed
584116241
Methylated C's in CpG context
16830309
Methylated C's in CHG context
1338341
Methylated C's in CHH context
8845420
Methylated C's in Unknown context
253358
Unmethylated C's in CpG context
69072886
Unmethylated C's in CHG context
120499030
Unmethylated C's in CHH context
367530255
Unmethylated C's in Unknown context
2169583
Percentage methylation (CpG context)
19.6%
Percentage methylation (CHG context)
1.1%
Percentage methylation (CHH context)
2.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4363996
original top strand
CTOT
4900240
complementary to original top strand
CTOB
4920484
complementary to original bottom strand
OB
4383378
original bottom strand
Deduplication
Alignments analysed
18568098
Unique alignments
12501093
Duplicates removed
6067005
Duplicated alignments were found at 3930394 different positions
