/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF07-EM03-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF07-EM03-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
48379049
Paired-end alignments with a unique best hit
15618590
Pairs without alignments under any condition
25139522
Pairs that did not map uniquely
7620937
Genomic sequence context not extractable (edges of chromosomes)
6
Cytosine Methylation
Total C's analysed
516811610
Methylated C's in CpG context
13655464
Methylated C's in CHG context
1514430
Methylated C's in CHH context
8653755
Methylated C's in Unknown context
247522
Unmethylated C's in CpG context
59306412
Unmethylated C's in CHG context
103483679
Unmethylated C's in CHH context
330197870
Unmethylated C's in Unknown context
2071696
Percentage methylation (CpG context)
18.7%
Percentage methylation (CHG context)
1.4%
Percentage methylation (CHH context)
2.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3745895
original top strand
CTOT
4059444
complementary to original top strand
CTOB
4067743
complementary to original bottom strand
OB
3745502
original bottom strand
Deduplication
Alignments analysed
15618584
Unique alignments
11405235
Duplicates removed
4213349
Duplicated alignments were found at 3008884 different positions
