/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF07-EM01-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF07-EM01-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
75480641
Paired-end alignments with a unique best hit
8248837
Pairs without alignments under any condition
61730915
Pairs that did not map uniquely
5500889
Genomic sequence context not extractable (edges of chromosomes)
9
Cytosine Methylation
Total C's analysed
171219488
Methylated C's in CpG context
3194441
Methylated C's in CHG context
407198
Methylated C's in CHH context
8271861
Methylated C's in Unknown context
242482
Unmethylated C's in CpG context
16796262
Unmethylated C's in CHG context
28691213
Unmethylated C's in CHH context
113858513
Unmethylated C's in Unknown context
978439
Percentage methylation (CpG context)
16.0%
Percentage methylation (CHG context)
1.4%
Percentage methylation (CHH context)
6.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2410845
original top strand
CTOT
1743331
complementary to original top strand
CTOB
1725475
complementary to original bottom strand
OB
2369177
original bottom strand
Deduplication
Alignments analysed
8248828
Unique alignments
4977458
Duplicates removed
3271370
Duplicated alignments were found at 1767598 different positions
