/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF06-EM06-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF06-EM06-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
80247899
Paired-end alignments with a unique best hit
21726849
Pairs without alignments under any condition
48022455
Pairs that did not map uniquely
10498595
Genomic sequence context not extractable (edges of chromosomes)
20
Cytosine Methylation
Total C's analysed
540906480
Methylated C's in CpG context
14456921
Methylated C's in CHG context
3822113
Methylated C's in CHH context
21997184
Methylated C's in Unknown context
525384
Unmethylated C's in CpG context
53245023
Unmethylated C's in CHG context
97253683
Unmethylated C's in CHH context
350131556
Unmethylated C's in Unknown context
3396653
Percentage methylation (CpG context)
21.4%
Percentage methylation (CHG context)
3.8%
Percentage methylation (CHH context)
5.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5390863
original top strand
CTOT
5508004
complementary to original top strand
CTOB
5470207
complementary to original bottom strand
OB
5357755
original bottom strand
Deduplication
Alignments analysed
21726829
Unique alignments
8138371
Duplicates removed
13588458
Duplicated alignments were found at 4440007 different positions
