EF06-EM02-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 14433376 lines in total Total number of methylation call strings processed: 28866752 Final Cytosine Methylation Report ================================= Total number of C's analysed: 254099662 Total methylated C's in CpG context: 7737892 Total methylated C's in CHG context: 1276886 Total methylated C's in CHH context: 5710580 Total C to T conversions in CpG context: 29947094 Total C to T conversions in CHG context: 52390291 Total C to T conversions in CHH context: 157036919 C methylated in CpG context: 20.5% C methylated in CHG context: 2.4% C methylated in CHH context: 3.5%