/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF06-EM02-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF06-EM02-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
53188835
Paired-end alignments with a unique best hit
19330848
Pairs without alignments under any condition
24520436
Pairs that did not map uniquely
9337551
Genomic sequence context not extractable (edges of chromosomes)
7
Cytosine Methylation
Total C's analysed
615791768
Methylated C's in CpG context
19028347
Methylated C's in CHG context
2948221
Methylated C's in CHH context
13301236
Methylated C's in Unknown context
449219
Unmethylated C's in CpG context
72906143
Unmethylated C's in CHG context
127811018
Unmethylated C's in CHH context
379796803
Unmethylated C's in Unknown context
2683254
Percentage methylation (CpG context)
20.7%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
3.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4734689
original top strand
CTOT
4932868
complementary to original top strand
CTOB
4931784
complementary to original bottom strand
OB
4731500
original bottom strand
Deduplication
Alignments analysed
19330841
Unique alignments
14433376
Duplicates removed
4897465
Duplicated alignments were found at 3660302 different positions