/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF06-EM01-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF06-EM01-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
56782240
Paired-end alignments with a unique best hit
19254185
Pairs without alignments under any condition
28725008
Pairs that did not map uniquely
8803047
Genomic sequence context not extractable (edges of chromosomes)
13
Cytosine Methylation
Total C's analysed
666787630
Methylated C's in CpG context
17066150
Methylated C's in CHG context
1883582
Methylated C's in CHH context
9735487
Methylated C's in Unknown context
310809
Unmethylated C's in CpG context
78528070
Unmethylated C's in CHG context
132143484
Unmethylated C's in CHH context
427430857
Unmethylated C's in Unknown context
2747140
Percentage methylation (CpG context)
17.9%
Percentage methylation (CHG context)
1.4%
Percentage methylation (CHH context)
2.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4541918
original top strand
CTOT
5077191
complementary to original top strand
CTOB
5090505
complementary to original bottom strand
OB
4544558
original bottom strand
Deduplication
Alignments analysed
19254172
Unique alignments
14750591
Duplicates removed
4503581
Duplicated alignments were found at 3431900 different positions
