EF05-EM06-Larvae_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 13459960 lines in total Total number of methylation call strings processed: 26919920 Final Cytosine Methylation Report ================================= Total number of C's analysed: 333355883 Total methylated C's in CpG context: 8758572 Total methylated C's in CHG context: 2939623 Total methylated C's in CHH context: 12862135 Total C to T conversions in CpG context: 35840966 Total C to T conversions in CHG context: 59986409 Total C to T conversions in CHH context: 212968178 C methylated in CpG context: 19.6% C methylated in CHG context: 4.7% C methylated in CHH context: 5.7%