/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF05-EM06-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF05-EM06-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
62575164
Paired-end alignments with a unique best hit
21714872
Pairs without alignments under any condition
32866900
Pairs that did not map uniquely
7993392
Genomic sequence context not extractable (edges of chromosomes)
8
Cytosine Methylation
Total C's analysed
830731865
Methylated C's in CpG context
22400465
Methylated C's in CHG context
6818064
Methylated C's in CHH context
29976832
Methylated C's in Unknown context
454341
Unmethylated C's in CpG context
90547001
Unmethylated C's in CHG context
153083789
Unmethylated C's in CHH context
527905714
Unmethylated C's in Unknown context
3354289
Percentage methylation (CpG context)
19.8%
Percentage methylation (CHG context)
4.3%
Percentage methylation (CHH context)
5.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5154322
original top strand
CTOT
5691891
complementary to original top strand
CTOB
5710450
complementary to original bottom strand
OB
5158201
original bottom strand
Deduplication
Alignments analysed
21714864
Unique alignments
13459960
Duplicates removed
8254904
Duplicated alignments were found at 5003875 different positions
