/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF05-EM05-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF05-EM05-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
48548054
Paired-end alignments with a unique best hit
4410419
Pairs without alignments under any condition
40594655
Pairs that did not map uniquely
3542980
Genomic sequence context not extractable (edges of chromosomes)
7
Cytosine Methylation
Total C's analysed
76674394
Methylated C's in CpG context
1156945
Methylated C's in CHG context
231352
Methylated C's in CHH context
4537735
Methylated C's in Unknown context
138959
Unmethylated C's in CpG context
7723284
Unmethylated C's in CHG context
12186707
Unmethylated C's in CHH context
50838371
Unmethylated C's in Unknown context
731315
Percentage methylation (CpG context)
13.0%
Percentage methylation (CHG context)
1.9%
Percentage methylation (CHH context)
8.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1139379
original top strand
CTOT
1074108
complementary to original top strand
CTOB
1066348
complementary to original bottom strand
OB
1130577
original bottom strand
Deduplication
Alignments analysed
4410412
Unique alignments
3199072
Duplicates removed
1211340
Duplicated alignments were found at 831028 different positions
