/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF05-EM01-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF05-EM01-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
39294742
Paired-end alignments with a unique best hit
11922548
Pairs without alignments under any condition
21460435
Pairs that did not map uniquely
5911759
Genomic sequence context not extractable (edges of chromosomes)
3
Cytosine Methylation
Total C's analysed
399118445
Methylated C's in CpG context
11209649
Methylated C's in CHG context
1135547
Methylated C's in CHH context
6939128
Methylated C's in Unknown context
307446
Unmethylated C's in CpG context
48189502
Unmethylated C's in CHG context
82581213
Unmethylated C's in CHH context
249063406
Unmethylated C's in Unknown context
1774410
Percentage methylation (CpG context)
18.9%
Percentage methylation (CHG context)
1.4%
Percentage methylation (CHH context)
2.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2903527
original top strand
CTOT
3054689
complementary to original top strand
CTOB
3059526
complementary to original bottom strand
OB
2904803
original bottom strand
Deduplication
Alignments analysed
11922545
Unique alignments
8834392
Duplicates removed
3088153
Duplicated alignments were found at 2291120 different positions
