/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF04-EM05-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF04-EM05-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
45628766
Paired-end alignments with a unique best hit
16508157
Pairs without alignments under any condition
21474728
Pairs that did not map uniquely
7645881
Genomic sequence context not extractable (edges of chromosomes)
5
Cytosine Methylation
Total C's analysed
576961869
Methylated C's in CpG context
15192000
Methylated C's in CHG context
1474807
Methylated C's in CHH context
7395303
Methylated C's in Unknown context
261520
Unmethylated C's in CpG context
69576219
Unmethylated C's in CHG context
117554488
Unmethylated C's in CHH context
365769052
Unmethylated C's in Unknown context
2415126
Percentage methylation (CpG context)
17.9%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
2.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3903278
original top strand
CTOT
4347635
complementary to original top strand
CTOB
4353913
complementary to original bottom strand
OB
3903326
original bottom strand
Deduplication
Alignments analysed
16508152
Unique alignments
12215079
Duplicates removed
4293073
Duplicated alignments were found at 3177425 different positions
