/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF04-EM04-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF04-EM04-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
70141415
Paired-end alignments with a unique best hit
9554896
Pairs without alignments under any condition
54144932
Pairs that did not map uniquely
6441587
Genomic sequence context not extractable (edges of chromosomes)
24
Cytosine Methylation
Total C's analysed
179687816
Methylated C's in CpG context
3894966
Methylated C's in CHG context
1072401
Methylated C's in CHH context
8124397
Methylated C's in Unknown context
288360
Unmethylated C's in CpG context
18819198
Unmethylated C's in CHG context
30837097
Unmethylated C's in CHH context
116939757
Unmethylated C's in Unknown context
1597788
Percentage methylation (CpG context)
17.1%
Percentage methylation (CHG context)
3.4%
Percentage methylation (CHH context)
6.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2369042
original top strand
CTOT
2422982
complementary to original top strand
CTOB
2410386
complementary to original bottom strand
OB
2352462
original bottom strand
Deduplication
Alignments analysed
9554872
Unique alignments
6882915
Duplicates removed
2671957
Duplicated alignments were found at 1902684 different positions