/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF03-EM05-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF03-EM05-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
57495743
Paired-end alignments with a unique best hit
17368223
Pairs without alignments under any condition
31935230
Pairs that did not map uniquely
8192290
Genomic sequence context not extractable (edges of chromosomes)
8
Cytosine Methylation
Total C's analysed
543066400
Methylated C's in CpG context
15881566
Methylated C's in CHG context
3354723
Methylated C's in CHH context
16109549
Methylated C's in Unknown context
457080
Unmethylated C's in CpG context
61768028
Unmethylated C's in CHG context
107772983
Unmethylated C's in CHH context
338179551
Unmethylated C's in Unknown context
2506331
Percentage methylation (CpG context)
20.5%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
4.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4316156
original top strand
CTOT
4362907
complementary to original top strand
CTOB
4372137
complementary to original bottom strand
OB
4317015
original bottom strand
Deduplication
Alignments analysed
17368215
Unique alignments
13454927
Duplicates removed
3913288
Duplicated alignments were found at 3027524 different positions