/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF03-EM04-Larvae_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF03-EM04-Larvae_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
74184423
Paired-end alignments with a unique best hit
23908336
Pairs without alignments under any condition
38192824
Pairs that did not map uniquely
12083263
Genomic sequence context not extractable (edges of chromosomes)
10
Cytosine Methylation
Total C's analysed
722086594
Methylated C's in CpG context
22718197
Methylated C's in CHG context
7003673
Methylated C's in CHH context
29868572
Methylated C's in Unknown context
687888
Unmethylated C's in CpG context
78620926
Unmethylated C's in CHG context
140604821
Unmethylated C's in CHH context
443270405
Unmethylated C's in Unknown context
3669282
Percentage methylation (CpG context)
22.4%
Percentage methylation (CHG context)
4.7%
Percentage methylation (CHH context)
6.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6549117
original top strand
CTOT
5400479
complementary to original top strand
CTOB
5409043
complementary to original bottom strand
OB
6549687
original bottom strand
Deduplication
Alignments analysed
23908326
Unique alignments
17883906
Duplicates removed
6024420
Duplicated alignments were found at 4501601 different positions
