EF03-EM03-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 16703527 lines in total Total number of methylation call strings processed: 33407054 Final Cytosine Methylation Report ================================= Total number of C's analysed: 190049367 Total methylated C's in CpG context: 4738667 Total methylated C's in CHG context: 1177474 Total methylated C's in CHH context: 8891401 Total C to T conversions in CpG context: 17482361 Total C to T conversions in CHG context: 32176756 Total C to T conversions in CHH context: 125582708 C methylated in CpG context: 21.3% C methylated in CHG context: 3.5% C methylated in CHH context: 6.6%