/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF03-EM03-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF03-EM03-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
132787654
Paired-end alignments with a unique best hit
24296257
Pairs without alignments under any condition
94202406
Pairs that did not map uniquely
14288991
Genomic sequence context not extractable (edges of chromosomes)
6
Cytosine Methylation
Total C's analysed
511101837
Methylated C's in CpG context
12712115
Methylated C's in CHG context
3117783
Methylated C's in CHH context
26175201
Methylated C's in Unknown context
660360
Unmethylated C's in CpG context
46597944
Unmethylated C's in CHG context
86336289
Unmethylated C's in CHH context
336162505
Unmethylated C's in Unknown context
3082294
Percentage methylation (CpG context)
21.4%
Percentage methylation (CHG context)
3.5%
Percentage methylation (CHH context)
7.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6744796
original top strand
CTOT
5426945
complementary to original top strand
CTOB
5402692
complementary to original bottom strand
OB
6721818
original bottom strand
Deduplication
Alignments analysed
24296251
Unique alignments
16703527
Duplicates removed
7592724
Duplicated alignments were found at 4955338 different positions
