/gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF02-EM02-Zygote_R1_001_val_1.fq.gz and /gscratch/scrubbed/samwhite/2018OALarvae_DNAm_discovery/trimmed_files/EF02-EM02-Zygote_R2_001_val_2.fq.gz
Data processed at 00:16 on 2021-05-09
Alignment Stats
Sequence pairs analysed in total
56944147
Paired-end alignments with a unique best hit
14177297
Pairs without alignments under any condition
33479307
Pairs that did not map uniquely
9287543
Genomic sequence context not extractable (edges of chromosomes)
18
Cytosine Methylation
Total C's analysed
368303412
Methylated C's in CpG context
8219994
Methylated C's in CHG context
1030273
Methylated C's in CHH context
9468397
Methylated C's in Unknown context
343493
Unmethylated C's in CpG context
43793710
Unmethylated C's in CHG context
72295531
Unmethylated C's in CHH context
233495507
Unmethylated C's in Unknown context
2399471
Percentage methylation (CpG context)
15.8%
Percentage methylation (CHG context)
1.4%
Percentage methylation (CHH context)
3.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3991436
original top strand
CTOT
3145292
complementary to original top strand
CTOB
3103611
complementary to original bottom strand
OB
3936940
original bottom strand
Deduplication
Alignments analysed
14177279
Unique alignments
10805324
Duplicates removed
3371955
Duplicated alignments were found at 2546601 different positions
