EF01-EM01-Zygote_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8908927 lines in total Total number of methylation call strings processed: 17817854 Final Cytosine Methylation Report ================================= Total number of C's analysed: 131551797 Total methylated C's in CpG context: 4206137 Total methylated C's in CHG context: 1155035 Total methylated C's in CHH context: 6414974 Total C to T conversions in CpG context: 12856711 Total C to T conversions in CHG context: 24410780 Total C to T conversions in CHH context: 82508160 C methylated in CpG context: 24.7% C methylated in CHG context: 4.5% C methylated in CHH context: 7.2%